Experiment: Citraconic 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24160 and PFLU_RS24165 are separated by 2 nucleotides PFLU_RS24165 and PFLU_RS24170 are separated by 162 nucleotides PFLU_RS24170 and PFLU_RS24175 are separated by 20 nucleotides
PFLU_RS24160: PFLU_RS24160 - HAMP domain-containing protein, at 5,405,889 to 5,407,925
_RS24160
PFLU_RS24165: PFLU_RS24165 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 5,407,928 to 5,408,506
_RS24165
PFLU_RS24170: PFLU_RS24170 - Nudix family hydrolase, at 5,408,669 to 5,409,613
_RS24170
PFLU_RS24175: PFLU_RS24175 - bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ, at 5,409,634 to 5,410,851
_RS24175
Position (kb) 5408
5409
5410 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5407.722 kb on - strand at 5407.722 kb on - strand at 5407.789 kb on - strand at 5407.859 kb on + strand at 5407.859 kb on + strand at 5407.859 kb on + strand at 5407.859 kb on + strand at 5407.859 kb on + strand at 5407.860 kb on - strand at 5407.952 kb on + strand at 5407.953 kb on - strand at 5408.081 kb on + strand, within PFLU_RS24165 at 5408.082 kb on - strand, within PFLU_RS24165 at 5408.133 kb on + strand, within PFLU_RS24165 at 5408.133 kb on + strand, within PFLU_RS24165 at 5408.134 kb on - strand, within PFLU_RS24165 at 5408.134 kb on - strand, within PFLU_RS24165 at 5408.134 kb on - strand, within PFLU_RS24165 at 5408.134 kb on - strand, within PFLU_RS24165 at 5408.192 kb on + strand, within PFLU_RS24165 at 5408.193 kb on - strand, within PFLU_RS24165 at 5408.193 kb on - strand, within PFLU_RS24165 at 5408.193 kb on - strand, within PFLU_RS24165 at 5408.193 kb on - strand, within PFLU_RS24165 at 5408.193 kb on - strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.402 kb on + strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.403 kb on - strand, within PFLU_RS24165 at 5408.404 kb on + strand, within PFLU_RS24165 at 5408.404 kb on + strand, within PFLU_RS24165 at 5408.404 kb on + strand, within PFLU_RS24165 at 5408.404 kb on + strand, within PFLU_RS24165 at 5408.404 kb on + strand, within PFLU_RS24165 at 5408.405 kb on - strand, within PFLU_RS24165 at 5408.405 kb on - strand, within PFLU_RS24165 at 5408.405 kb on - strand, within PFLU_RS24165 at 5408.425 kb on - strand, within PFLU_RS24165 at 5408.425 kb on - strand, within PFLU_RS24165 at 5408.425 kb on - strand, within PFLU_RS24165 at 5408.466 kb on + strand at 5408.467 kb on - strand at 5408.467 kb on - strand at 5408.504 kb on + strand at 5408.505 kb on - strand at 5408.505 kb on - strand at 5408.513 kb on - strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.657 kb on + strand at 5408.670 kb on + strand at 5408.670 kb on + strand at 5408.671 kb on - strand at 5408.751 kb on - strand at 5408.962 kb on + strand, within PFLU_RS24170 at 5408.962 kb on + strand, within PFLU_RS24170 at 5408.963 kb on - strand, within PFLU_RS24170 at 5408.963 kb on - strand, within PFLU_RS24170 at 5408.970 kb on + strand, within PFLU_RS24170 at 5408.970 kb on + strand, within PFLU_RS24170 at 5408.970 kb on + strand, within PFLU_RS24170 at 5408.971 kb on - strand, within PFLU_RS24170 at 5408.971 kb on - strand, within PFLU_RS24170 at 5408.971 kb on - strand, within PFLU_RS24170 at 5408.971 kb on - strand, within PFLU_RS24170 at 5408.974 kb on + strand, within PFLU_RS24170 at 5408.974 kb on + strand, within PFLU_RS24170 at 5408.974 kb on + strand, within PFLU_RS24170 at 5408.975 kb on - strand, within PFLU_RS24170 at 5408.975 kb on - strand, within PFLU_RS24170 at 5408.975 kb on - strand, within PFLU_RS24170 at 5408.975 kb on - strand, within PFLU_RS24170 at 5408.975 kb on - strand, within PFLU_RS24170 at 5408.975 kb on - strand, within PFLU_RS24170 at 5409.102 kb on + strand, within PFLU_RS24170 at 5409.103 kb on - strand, within PFLU_RS24170 at 5409.219 kb on + strand, within PFLU_RS24170 at 5409.220 kb on - strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.276 kb on + strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.277 kb on - strand, within PFLU_RS24170 at 5409.343 kb on + strand, within PFLU_RS24170 at 5409.390 kb on + strand, within PFLU_RS24170 at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.596 kb on + strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.597 kb on - strand at 5409.639 kb on + strand at 5409.639 kb on + strand at 5409.639 kb on + strand at 5409.639 kb on + strand at 5409.639 kb on + strand at 5409.640 kb on - strand at 5409.640 kb on - strand at 5409.640 kb on - strand at 5409.640 kb on - strand at 5409.640 kb on - strand at 5409.640 kb on - strand at 5409.665 kb on + strand at 5409.665 kb on + strand at 5409.665 kb on + strand at 5409.666 kb on - strand at 5409.666 kb on - strand at 5409.666 kb on - strand at 5409.779 kb on + strand, within PFLU_RS24175 at 5409.779 kb on + strand, within PFLU_RS24175 at 5409.779 kb on + strand, within PFLU_RS24175 at 5409.779 kb on + strand, within PFLU_RS24175 at 5409.779 kb on + strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.780 kb on - strand, within PFLU_RS24175 at 5409.888 kb on + strand, within PFLU_RS24175 at 5409.889 kb on - strand, within PFLU_RS24175 at 5409.953 kb on + strand, within PFLU_RS24175 at 5409.954 kb on - strand, within PFLU_RS24175 at 5409.954 kb on - strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.116 kb on + strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.117 kb on - strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.274 kb on + strand, within PFLU_RS24175 at 5410.275 kb on - strand, within PFLU_RS24175 at 5410.275 kb on - strand, within PFLU_RS24175 at 5410.428 kb on + strand, within PFLU_RS24175 at 5410.428 kb on + strand, within PFLU_RS24175 at 5410.428 kb on + strand, within PFLU_RS24175 at 5410.429 kb on - strand, within PFLU_RS24175 at 5410.515 kb on - strand, within PFLU_RS24175
Per-strain Table
Position Strand Gene LocusTag Fraction Citraconic 20 mM (C) remove 5,407,722 - +0.2 5,407,722 - -0.2 5,407,789 - +1.2 5,407,859 + +1.7 5,407,859 + +0.4 5,407,859 + -1.1 5,407,859 + +1.2 5,407,859 + -0.2 5,407,860 - +0.2 5,407,952 + -1.1 5,407,953 - -1.5 5,408,081 + PFLU_RS24165 0.26 +0.0 5,408,082 - PFLU_RS24165 0.27 -2.0 5,408,133 + PFLU_RS24165 0.35 -0.7 5,408,133 + PFLU_RS24165 0.35 -0.6 5,408,134 - PFLU_RS24165 0.36 -0.6 5,408,134 - PFLU_RS24165 0.36 +0.2 5,408,134 - PFLU_RS24165 0.36 +0.6 5,408,134 - PFLU_RS24165 0.36 +0.9 5,408,192 + PFLU_RS24165 0.46 -1.1 5,408,193 - PFLU_RS24165 0.46 +0.3 5,408,193 - PFLU_RS24165 0.46 -0.9 5,408,193 - PFLU_RS24165 0.46 -1.0 5,408,193 - PFLU_RS24165 0.46 +0.7 5,408,193 - PFLU_RS24165 0.46 +0.5 5,408,402 + PFLU_RS24165 0.82 +1.0 5,408,402 + PFLU_RS24165 0.82 -1.8 5,408,402 + PFLU_RS24165 0.82 +0.9 5,408,402 + PFLU_RS24165 0.82 -1.4 5,408,402 + PFLU_RS24165 0.82 +1.0 5,408,402 + PFLU_RS24165 0.82 -0.7 5,408,402 + PFLU_RS24165 0.82 -0.1 5,408,402 + PFLU_RS24165 0.82 -1.0 5,408,402 + PFLU_RS24165 0.82 +1.4 5,408,402 + PFLU_RS24165 0.82 +0.6 5,408,402 + PFLU_RS24165 0.82 -1.8 5,408,402 + PFLU_RS24165 0.82 +0.5 5,408,402 + PFLU_RS24165 0.82 +0.4 5,408,402 + PFLU_RS24165 0.82 -1.6 5,408,403 - PFLU_RS24165 0.82 -0.4 5,408,403 - PFLU_RS24165 0.82 -1.6 5,408,403 - PFLU_RS24165 0.82 +0.2 5,408,403 - PFLU_RS24165 0.82 -0.5 5,408,403 - PFLU_RS24165 0.82 -0.0 5,408,403 - PFLU_RS24165 0.82 -0.4 5,408,403 - PFLU_RS24165 0.82 +1.5 5,408,403 - PFLU_RS24165 0.82 +1.3 5,408,403 - PFLU_RS24165 0.82 -0.6 5,408,403 - PFLU_RS24165 0.82 +0.2 5,408,403 - PFLU_RS24165 0.82 -0.4 5,408,403 - PFLU_RS24165 0.82 +0.4 5,408,403 - PFLU_RS24165 0.82 -0.5 5,408,404 + PFLU_RS24165 0.82 -0.5 5,408,404 + PFLU_RS24165 0.82 -0.8 5,408,404 + PFLU_RS24165 0.82 -0.0 5,408,404 + PFLU_RS24165 0.82 +0.1 5,408,404 + PFLU_RS24165 0.82 +0.1 5,408,405 - PFLU_RS24165 0.82 -0.1 5,408,405 - PFLU_RS24165 0.82 +0.4 5,408,405 - PFLU_RS24165 0.82 +0.4 5,408,425 - PFLU_RS24165 0.86 -0.7 5,408,425 - PFLU_RS24165 0.86 -2.0 5,408,425 - PFLU_RS24165 0.86 +2.2 5,408,466 + -1.6 5,408,467 - +0.7 5,408,467 - +0.7 5,408,504 + -0.9 5,408,505 - -0.9 5,408,505 - +0.4 5,408,513 - -0.1 5,408,657 + +0.3 5,408,657 + +1.8 5,408,657 + +0.9 5,408,657 + -0.1 5,408,657 + -0.2 5,408,657 + +2.5 5,408,657 + +1.4 5,408,657 + +0.7 5,408,657 + -0.8 5,408,657 + +0.5 5,408,657 + +0.3 5,408,657 + -0.8 5,408,670 + -0.0 5,408,670 + -1.0 5,408,671 - -0.0 5,408,751 - -2.5 5,408,962 + PFLU_RS24170 0.31 -3.8 5,408,962 + PFLU_RS24170 0.31 -1.8 5,408,963 - PFLU_RS24170 0.31 -1.6 5,408,963 - PFLU_RS24170 0.31 -0.4 5,408,970 + PFLU_RS24170 0.32 -0.6 5,408,970 + PFLU_RS24170 0.32 -1.6 5,408,970 + PFLU_RS24170 0.32 -3.1 5,408,971 - PFLU_RS24170 0.32 -2.9 5,408,971 - PFLU_RS24170 0.32 -2.1 5,408,971 - PFLU_RS24170 0.32 -2.0 5,408,971 - PFLU_RS24170 0.32 -1.0 5,408,974 + PFLU_RS24170 0.32 -2.0 5,408,974 + PFLU_RS24170 0.32 -2.5 5,408,974 + PFLU_RS24170 0.32 -0.4 5,408,975 - PFLU_RS24170 0.32 -1.0 5,408,975 - PFLU_RS24170 0.32 +0.2 5,408,975 - PFLU_RS24170 0.32 -1.3 5,408,975 - PFLU_RS24170 0.32 -3.3 5,408,975 - PFLU_RS24170 0.32 -2.2 5,408,975 - PFLU_RS24170 0.32 -1.2 5,409,102 + PFLU_RS24170 0.46 -0.2 5,409,103 - PFLU_RS24170 0.46 -1.1 5,409,219 + PFLU_RS24170 0.58 -1.6 5,409,220 - PFLU_RS24170 0.58 -1.9 5,409,276 + PFLU_RS24170 0.64 -0.6 5,409,276 + PFLU_RS24170 0.64 -1.4 5,409,276 + PFLU_RS24170 0.64 -0.6 5,409,276 + PFLU_RS24170 0.64 +1.2 5,409,276 + PFLU_RS24170 0.64 -1.4 5,409,276 + PFLU_RS24170 0.64 -0.3 5,409,276 + PFLU_RS24170 0.64 -1.1 5,409,276 + PFLU_RS24170 0.64 -1.1 5,409,277 - PFLU_RS24170 0.64 -0.6 5,409,277 - PFLU_RS24170 0.64 +0.0 5,409,277 - PFLU_RS24170 0.64 +0.9 5,409,277 - PFLU_RS24170 0.64 -1.3 5,409,277 - PFLU_RS24170 0.64 -1.1 5,409,277 - PFLU_RS24170 0.64 +1.4 5,409,277 - PFLU_RS24170 0.64 -1.1 5,409,277 - PFLU_RS24170 0.64 +0.2 5,409,343 + PFLU_RS24170 0.71 -1.3 5,409,390 + PFLU_RS24170 0.76 -0.8 5,409,596 + +0.4 5,409,596 + +0.2 5,409,596 + +0.2 5,409,596 + -0.8 5,409,596 + -0.4 5,409,596 + -2.1 5,409,596 + +1.5 5,409,596 + -2.8 5,409,596 + +0.5 5,409,596 + +0.4 5,409,596 + -0.4 5,409,596 + +0.9 5,409,597 - -2.4 5,409,597 - +0.7 5,409,597 - -2.1 5,409,597 - -1.7 5,409,597 - -1.5 5,409,597 - +0.0 5,409,597 - +0.3 5,409,597 - -0.4 5,409,597 - -0.9 5,409,597 - +0.1 5,409,597 - -3.6 5,409,639 + +0.4 5,409,639 + +1.2 5,409,639 + +1.3 5,409,639 + -0.1 5,409,639 + +1.6 5,409,640 - +0.1 5,409,640 - -0.3 5,409,640 - -1.4 5,409,640 - -1.1 5,409,640 - -0.3 5,409,640 - -0.0 5,409,665 + +1.3 5,409,665 + -1.3 5,409,665 + -0.8 5,409,666 - +0.4 5,409,666 - +0.7 5,409,666 - +1.2 5,409,779 + PFLU_RS24175 0.12 +0.0 5,409,779 + PFLU_RS24175 0.12 -2.7 5,409,779 + PFLU_RS24175 0.12 +0.2 5,409,779 + PFLU_RS24175 0.12 -0.4 5,409,779 + PFLU_RS24175 0.12 -0.8 5,409,780 - PFLU_RS24175 0.12 -0.0 5,409,780 - PFLU_RS24175 0.12 +0.2 5,409,780 - PFLU_RS24175 0.12 +0.0 5,409,780 - PFLU_RS24175 0.12 -1.5 5,409,780 - PFLU_RS24175 0.12 +0.9 5,409,780 - PFLU_RS24175 0.12 +0.5 5,409,780 - PFLU_RS24175 0.12 +0.2 5,409,888 + PFLU_RS24175 0.21 -1.0 5,409,889 - PFLU_RS24175 0.21 -0.8 5,409,953 + PFLU_RS24175 0.26 +0.6 5,409,954 - PFLU_RS24175 0.26 -1.8 5,409,954 - PFLU_RS24175 0.26 +1.2 5,410,116 + PFLU_RS24175 0.40 +1.6 5,410,116 + PFLU_RS24175 0.40 -0.6 5,410,116 + PFLU_RS24175 0.40 +1.5 5,410,117 - PFLU_RS24175 0.40 +0.2 5,410,117 - PFLU_RS24175 0.40 -0.3 5,410,117 - PFLU_RS24175 0.40 -0.5 5,410,117 - PFLU_RS24175 0.40 -0.2 5,410,117 - PFLU_RS24175 0.40 -1.1 5,410,117 - PFLU_RS24175 0.40 -0.2 5,410,117 - PFLU_RS24175 0.40 +0.7 5,410,117 - PFLU_RS24175 0.40 +0.7 5,410,117 - PFLU_RS24175 0.40 -2.5 5,410,274 + PFLU_RS24175 0.53 -1.1 5,410,274 + PFLU_RS24175 0.53 -1.1 5,410,274 + PFLU_RS24175 0.53 +1.8 5,410,274 + PFLU_RS24175 0.53 +0.9 5,410,275 - PFLU_RS24175 0.53 -0.1 5,410,275 - PFLU_RS24175 0.53 -0.6 5,410,428 + PFLU_RS24175 0.65 -0.0 5,410,428 + PFLU_RS24175 0.65 -0.9 5,410,428 + PFLU_RS24175 0.65 +1.7 5,410,429 - PFLU_RS24175 0.65 +1.4 5,410,515 - PFLU_RS24175 0.72 -1.4
Or see this region's nucleotide sequence