Experiment: Citraconic 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03295 and PFLU_RS03300 are separated by 193 nucleotides PFLU_RS03300 and PFLU_RS03305 are separated by 49 nucleotides PFLU_RS03305 and PFLU_RS03310 are separated by 12 nucleotides
PFLU_RS03295: PFLU_RS03295 - 8-oxoguanine deaminase, at 758,863 to 760,221
_RS03295
PFLU_RS03300: PFLU_RS03300 - SDR family oxidoreductase, at 760,415 to 761,101
_RS03300
PFLU_RS03305: PFLU_RS03305 - YigZ family protein, at 761,151 to 761,732
_RS03305
PFLU_RS03310: PFLU_RS03310 - TetR/AcrR family transcriptional regulator, at 761,745 to 762,404
_RS03310
Position (kb) 760
761
762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 759.456 kb on - strand, within PFLU_RS03295 at 759.650 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.700 kb on + strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.701 kb on - strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.839 kb on + strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 759.840 kb on - strand, within PFLU_RS03295 at 760.013 kb on + strand, within PFLU_RS03295 at 760.014 kb on - strand, within PFLU_RS03295 at 760.206 kb on + strand at 760.206 kb on + strand at 760.206 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.312 kb on + strand at 760.313 kb on - strand at 760.313 kb on - strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.317 kb on + strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.318 kb on - strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.323 kb on + strand at 760.324 kb on - strand at 760.324 kb on - strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.340 kb on + strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.341 kb on - strand at 760.346 kb on + strand at 760.352 kb on + strand at 760.352 kb on + strand at 760.352 kb on + strand at 760.353 kb on - strand at 760.353 kb on - strand at 760.353 kb on - strand at 760.441 kb on - strand at 760.473 kb on + strand at 760.473 kb on + strand at 760.473 kb on + strand at 760.474 kb on - strand at 760.474 kb on - strand at 760.474 kb on - strand at 760.543 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.577 kb on + strand, within PFLU_RS03300 at 760.578 kb on - strand, within PFLU_RS03300 at 760.609 kb on + strand, within PFLU_RS03300 at 760.609 kb on + strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.610 kb on - strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.653 kb on + strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.654 kb on - strand, within PFLU_RS03300 at 760.719 kb on - strand, within PFLU_RS03300 at 760.786 kb on + strand, within PFLU_RS03300 at 760.787 kb on - strand, within PFLU_RS03300 at 761.096 kb on - strand at 761.096 kb on - strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.160 kb on + strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.161 kb on - strand at 761.168 kb on + strand at 761.168 kb on + strand at 761.169 kb on - strand at 761.393 kb on + strand, within PFLU_RS03305 at 761.393 kb on + strand, within PFLU_RS03305 at 761.411 kb on - strand, within PFLU_RS03305 at 761.452 kb on + strand, within PFLU_RS03305 at 761.614 kb on + strand, within PFLU_RS03305 at 761.614 kb on + strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.615 kb on - strand, within PFLU_RS03305 at 761.672 kb on + strand, within PFLU_RS03305 at 761.673 kb on - strand, within PFLU_RS03305 at 761.673 kb on - strand, within PFLU_RS03305 at 761.689 kb on - strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.732 kb on + strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.733 kb on - strand at 761.746 kb on + strand at 761.746 kb on + strand at 761.747 kb on - strand at 761.747 kb on - strand at 761.747 kb on - strand at 761.749 kb on + strand at 761.750 kb on - strand at 761.750 kb on - strand at 761.876 kb on - strand, within PFLU_RS03310 at 761.876 kb on - strand, within PFLU_RS03310 at 761.876 kb on - strand, within PFLU_RS03310 at 761.923 kb on - strand, within PFLU_RS03310 at 762.008 kb on - strand, within PFLU_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction Citraconic 20 mM (C) remove 759,456 - PFLU_RS03295 0.44 -1.1 759,650 + PFLU_RS03295 0.58 +0.5 759,700 + PFLU_RS03295 0.62 -2.9 759,700 + PFLU_RS03295 0.62 -0.9 759,700 + PFLU_RS03295 0.62 +0.5 759,700 + PFLU_RS03295 0.62 +0.7 759,700 + PFLU_RS03295 0.62 -0.7 759,701 - PFLU_RS03295 0.62 +0.6 759,701 - PFLU_RS03295 0.62 +0.3 759,701 - PFLU_RS03295 0.62 -0.1 759,701 - PFLU_RS03295 0.62 -0.9 759,839 + PFLU_RS03295 0.72 -0.2 759,839 + PFLU_RS03295 0.72 +0.3 759,839 + PFLU_RS03295 0.72 +0.3 759,839 + PFLU_RS03295 0.72 +0.7 759,839 + PFLU_RS03295 0.72 -0.2 759,839 + PFLU_RS03295 0.72 +0.3 759,839 + PFLU_RS03295 0.72 +0.4 759,839 + PFLU_RS03295 0.72 +0.1 759,839 + PFLU_RS03295 0.72 -1.4 759,840 - PFLU_RS03295 0.72 -0.3 759,840 - PFLU_RS03295 0.72 -0.1 759,840 - PFLU_RS03295 0.72 -1.0 759,840 - PFLU_RS03295 0.72 -0.4 759,840 - PFLU_RS03295 0.72 -0.6 759,840 - PFLU_RS03295 0.72 -1.2 760,013 + PFLU_RS03295 0.85 +0.8 760,014 - PFLU_RS03295 0.85 -0.2 760,206 + -0.1 760,206 + -1.7 760,206 + -0.3 760,312 + -0.6 760,312 + +0.9 760,312 + -0.4 760,312 + +1.0 760,313 - -0.1 760,313 - +1.8 760,317 + +0.5 760,317 + -0.6 760,317 + -0.3 760,317 + +0.5 760,317 + +0.9 760,317 + +0.8 760,317 + -0.8 760,317 + +0.7 760,317 + -0.3 760,317 + +0.3 760,317 + -1.9 760,317 + +0.1 760,317 + -0.0 760,317 + +0.2 760,317 + -0.3 760,317 + +0.7 760,317 + +0.7 760,317 + -1.1 760,317 + +0.4 760,318 - +1.3 760,318 - -1.4 760,318 - -1.2 760,318 - +0.8 760,318 - -2.2 760,318 - -0.6 760,318 - -0.9 760,318 - -0.3 760,318 - -2.5 760,318 - +0.6 760,318 - -0.2 760,318 - +0.2 760,318 - -0.0 760,318 - +0.7 760,318 - +1.0 760,318 - -0.3 760,318 - -0.8 760,318 - +0.5 760,318 - -0.1 760,318 - -1.1 760,318 - -0.5 760,318 - +0.9 760,318 - -0.2 760,318 - +0.6 760,318 - +0.5 760,318 - -1.4 760,318 - -0.5 760,318 - +0.4 760,323 + -0.4 760,323 + -0.5 760,323 + -0.8 760,323 + +0.6 760,323 + -0.8 760,324 - -0.5 760,324 - +0.4 760,340 + -0.0 760,340 + +0.0 760,340 + +0.7 760,340 + -1.4 760,340 + +0.4 760,340 + +0.4 760,341 - +1.7 760,341 - -1.1 760,341 - -0.7 760,341 - -2.4 760,346 + -0.1 760,352 + +0.7 760,352 + -1.1 760,352 + +1.4 760,353 - +1.4 760,353 - +0.7 760,353 - +1.7 760,441 - -1.8 760,473 + +0.7 760,473 + +1.3 760,473 + +1.5 760,474 - +1.5 760,474 - +1.4 760,474 - +0.7 760,543 + PFLU_RS03300 0.19 +1.5 760,577 + PFLU_RS03300 0.24 +0.8 760,577 + PFLU_RS03300 0.24 -0.6 760,577 + PFLU_RS03300 0.24 +1.1 760,577 + PFLU_RS03300 0.24 +0.9 760,578 - PFLU_RS03300 0.24 +0.9 760,609 + PFLU_RS03300 0.28 +1.9 760,609 + PFLU_RS03300 0.28 +1.5 760,610 - PFLU_RS03300 0.28 +1.4 760,610 - PFLU_RS03300 0.28 +1.9 760,610 - PFLU_RS03300 0.28 +0.5 760,610 - PFLU_RS03300 0.28 +1.0 760,610 - PFLU_RS03300 0.28 +1.4 760,610 - PFLU_RS03300 0.28 +0.8 760,610 - PFLU_RS03300 0.28 +1.2 760,653 + PFLU_RS03300 0.35 +0.4 760,653 + PFLU_RS03300 0.35 +0.1 760,653 + PFLU_RS03300 0.35 +1.4 760,654 - PFLU_RS03300 0.35 +0.6 760,654 - PFLU_RS03300 0.35 +0.4 760,719 - PFLU_RS03300 0.44 +0.7 760,786 + PFLU_RS03300 0.54 +0.6 760,787 - PFLU_RS03300 0.54 +1.7 761,096 - +1.5 761,096 - +2.2 761,160 + -1.3 761,160 + -1.0 761,160 + +0.6 761,160 + -0.2 761,160 + +1.3 761,160 + +0.6 761,161 - -1.4 761,161 - +0.9 761,161 - -1.3 761,161 - -1.1 761,161 - -0.8 761,161 - -0.0 761,161 - -1.3 761,168 + +1.4 761,168 + +0.7 761,169 - -1.3 761,393 + PFLU_RS03305 0.42 -1.8 761,393 + PFLU_RS03305 0.42 -0.3 761,411 - PFLU_RS03305 0.45 -2.5 761,452 + PFLU_RS03305 0.52 -0.2 761,614 + PFLU_RS03305 0.80 -0.5 761,614 + PFLU_RS03305 0.80 -0.8 761,615 - PFLU_RS03305 0.80 -0.2 761,615 - PFLU_RS03305 0.80 +0.9 761,615 - PFLU_RS03305 0.80 -0.8 761,615 - PFLU_RS03305 0.80 -0.8 761,672 + PFLU_RS03305 0.90 -1.3 761,673 - PFLU_RS03305 0.90 +0.3 761,673 - PFLU_RS03305 0.90 -1.4 761,689 - +0.3 761,732 + -0.9 761,732 + +0.3 761,732 + +0.8 761,732 + -0.7 761,732 + +0.6 761,732 + -0.4 761,733 - +1.7 761,733 - -0.3 761,733 - +0.3 761,733 - -1.6 761,733 - +1.0 761,733 - +0.6 761,733 - +1.7 761,733 - -0.7 761,746 + -0.2 761,746 + +0.3 761,747 - -0.8 761,747 - -0.8 761,747 - -1.7 761,749 + -0.1 761,750 - -0.2 761,750 - -1.5 761,876 - PFLU_RS03310 0.20 -0.8 761,876 - PFLU_RS03310 0.20 +0.3 761,876 - PFLU_RS03310 0.20 -1.3 761,923 - PFLU_RS03310 0.27 -2.9 762,008 - PFLU_RS03310 0.40 -0.4
Or see this region's nucleotide sequence