Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24010 and BPHYT_RS24015 are separated by 35 nucleotides BPHYT_RS24015 and BPHYT_RS24020 are separated by 38 nucleotides BPHYT_RS24020 and BPHYT_RS24025 are separated by 180 nucleotides BPHYT_RS24025 and BPHYT_RS24030 are separated by 25 nucleotides
BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 <small>(from data)</small>, at 952,179 to 952,931
_RS24010
BPHYT_RS24015: BPHYT_RS24015 - L-histidine ABC transporter, ATPase component <small>(from data)</small>, at 952,967 to 953,758
_RS24015
BPHYT_RS24020: BPHYT_RS24020 - phenylalanine/histidine ammonia-lyase, at 953,797 to 955,446
_RS24020
BPHYT_RS24025: BPHYT_RS24025 - histidine utilization repressor, at 955,627 to 956,310
_RS24025
BPHYT_RS24030: BPHYT_RS24030 - histidine utilization repressor, at 956,336 to 957,139
_RS24030
Position (kb) 953
954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 953.951 kb on - strand at 954.237 kb on + strand, within BPHYT_RS24020 at 954.265 kb on + strand, within BPHYT_RS24020 at 954.516 kb on + strand, within BPHYT_RS24020 at 954.940 kb on + strand, within BPHYT_RS24020 at 954.941 kb on - strand, within BPHYT_RS24020 at 955.560 kb on + strand at 955.560 kb on + strand at 955.636 kb on + strand at 956.027 kb on - strand, within BPHYT_RS24025 at 956.038 kb on + strand, within BPHYT_RS24025 at 956.104 kb on + strand, within BPHYT_RS24025 at 956.105 kb on - strand, within BPHYT_RS24025 at 956.105 kb on - strand, within BPHYT_RS24025 at 956.150 kb on - strand, within BPHYT_RS24025 at 956.150 kb on - strand, within BPHYT_RS24025 at 956.171 kb on - strand, within BPHYT_RS24025
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 953,951 - -0.2 954,237 + BPHYT_RS24020 0.27 +1.2 954,265 + BPHYT_RS24020 0.28 +0.5 954,516 + BPHYT_RS24020 0.44 +0.5 954,940 + BPHYT_RS24020 0.69 +0.5 954,941 - BPHYT_RS24020 0.69 +0.0 955,560 + +0.0 955,560 + -2.8 955,636 + -0.1 956,027 - BPHYT_RS24025 0.58 -1.4 956,038 + BPHYT_RS24025 0.60 -0.6 956,104 + BPHYT_RS24025 0.70 -0.8 956,105 - BPHYT_RS24025 0.70 +1.1 956,105 - BPHYT_RS24025 0.70 +1.0 956,150 - BPHYT_RS24025 0.76 +0.1 956,150 - BPHYT_RS24025 0.76 +0.3 956,171 - BPHYT_RS24025 0.80 -1.2
Or see this region's nucleotide sequence