Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22185

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22175 and BPHYT_RS22180 are separated by 27 nucleotidesBPHYT_RS22180 and BPHYT_RS22185 are separated by 56 nucleotidesBPHYT_RS22185 and BPHYT_RS22190 are separated by 603 nucleotides BPHYT_RS22175: BPHYT_RS22175 - hypothetical protein, at 534,930 to 536,003 _RS22175 BPHYT_RS22180: BPHYT_RS22180 - hypothetical protein, at 536,031 to 536,270 _RS22180 BPHYT_RS22185: BPHYT_RS22185 - hypothetical protein, at 536,327 to 536,617 _RS22185 BPHYT_RS22190: BPHYT_RS22190 - nucleoid-structuring protein H-NS, at 537,221 to 538,072 _RS22190 Position (kb) 536 537Strain fitness (log2 ratio) -1 0 1 2 3 4at 535.542 kb on + strand, within BPHYT_RS22175at 535.543 kb on - strand, within BPHYT_RS22175at 535.713 kb on - strand, within BPHYT_RS22175at 535.809 kb on + strand, within BPHYT_RS22175at 536.173 kb on - strand, within BPHYT_RS22180at 536.257 kb on + strandat 536.258 kb on - strandat 536.258 kb on - strandat 536.313 kb on + strandat 536.316 kb on - strandat 536.487 kb on + strand, within BPHYT_RS22185at 536.718 kb on - strandat 536.853 kb on + strandat 536.920 kb on + strandat 536.922 kb on + strandat 536.936 kb on + strandat 537.452 kb on + strand, within BPHYT_RS22190

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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535,542 + BPHYT_RS22175 0.57 +3.9
535,543 - BPHYT_RS22175 0.57 -0.3
535,713 - BPHYT_RS22175 0.73 -0.3
535,809 + BPHYT_RS22175 0.82 +0.1
536,173 - BPHYT_RS22180 0.59 +0.8
536,257 + -0.0
536,258 - -0.5
536,258 - -0.0
536,313 + +0.7
536,316 - -1.0
536,487 + BPHYT_RS22185 0.55 +1.7
536,718 - -0.1
536,853 + -1.7
536,920 + +0.7
536,922 + +0.2
536,936 + -0.6
537,452 + BPHYT_RS22190 0.27 -0.5

Or see this region's nucleotide sequence