Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21780

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21775 and BPHYT_RS21780 are separated by 63 nucleotidesBPHYT_RS21780 and BPHYT_RS21785 are separated by 439 nucleotidesBPHYT_RS21785 and BPHYT_RS21790 are separated by 88 nucleotides BPHYT_RS21775: BPHYT_RS21775 - long-chain fatty acid--CoA ligase, at 441,277 to 442,938 _RS21775 BPHYT_RS21780: BPHYT_RS21780 - MFS transporter, at 443,002 to 444,384 _RS21780 BPHYT_RS21785: BPHYT_RS21785 - hypothetical protein, at 444,824 to 445,156 _RS21785 BPHYT_RS21790: BPHYT_RS21790 - hypothetical protein, at 445,245 to 445,583 _RS21790 Position (kb) 443 444 445Strain fitness (log2 ratio) -1 0 1 2at 442.199 kb on - strand, within BPHYT_RS21775at 442.519 kb on + strand, within BPHYT_RS21775at 442.982 kb on + strandat 442.983 kb on - strandat 443.037 kb on + strandat 443.038 kb on - strandat 443.876 kb on - strand, within BPHYT_RS21780at 444.074 kb on - strand, within BPHYT_RS21780at 444.189 kb on + strand, within BPHYT_RS21780at 444.539 kb on + strandat 444.673 kb on - strandat 445.117 kb on + strand, within BPHYT_RS21785at 445.146 kb on - strandat 445.289 kb on + strand, within BPHYT_RS21790at 445.290 kb on - strand, within BPHYT_RS21790

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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442,199 - BPHYT_RS21775 0.55 -0.6
442,519 + BPHYT_RS21775 0.75 -0.3
442,982 + +0.5
442,983 - +0.2
443,037 + -0.9
443,038 - -1.7
443,876 - BPHYT_RS21780 0.63 +2.0
444,074 - BPHYT_RS21780 0.78 +0.4
444,189 + BPHYT_RS21780 0.86 -0.4
444,539 + -0.8
444,673 - -1.7
445,117 + BPHYT_RS21785 0.88 -0.7
445,146 - -1.4
445,289 + BPHYT_RS21790 0.13 -0.9
445,290 - BPHYT_RS21790 0.13 -0.3

Or see this region's nucleotide sequence