Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20355 and BPHYT_RS20360 are separated by 1 nucleotides BPHYT_RS20360 and BPHYT_RS20365 are separated by 25 nucleotides BPHYT_RS20365 and BPHYT_RS20370 are separated by 182 nucleotides
BPHYT_RS20355: BPHYT_RS20355 - ABC transporter substrate-binding protein, at 129,604 to 130,962
_RS20355
BPHYT_RS20360: BPHYT_RS20360 - beta-lactamase, at 130,964 to 131,278
_RS20360
BPHYT_RS20365: BPHYT_RS20365 - LysR family transcriptional regulator, at 131,304 to 132,221
_RS20365
BPHYT_RS20370: BPHYT_RS20370 - MFS transporter, at 132,404 to 133,672
_RS20370
Position (kb) 131
132
133 Strain fitness (log2 ratio) -1
0
1
2 at 130.576 kb on + strand, within BPHYT_RS20355 at 130.842 kb on + strand at 131.012 kb on - strand, within BPHYT_RS20360 at 131.036 kb on + strand at 131.037 kb on - strand, within BPHYT_RS20360 at 131.051 kb on + strand, within BPHYT_RS20360 at 131.285 kb on + strand at 131.285 kb on + strand at 131.288 kb on - strand at 131.404 kb on + strand, within BPHYT_RS20365 at 131.491 kb on + strand, within BPHYT_RS20365 at 132.132 kb on - strand at 132.132 kb on - strand at 132.365 kb on + strand at 132.366 kb on - strand at 132.569 kb on + strand, within BPHYT_RS20370 at 132.569 kb on + strand, within BPHYT_RS20370 at 132.570 kb on - strand, within BPHYT_RS20370 at 132.570 kb on - strand, within BPHYT_RS20370 at 133.166 kb on + strand, within BPHYT_RS20370 at 133.169 kb on - strand, within BPHYT_RS20370 at 133.172 kb on + strand, within BPHYT_RS20370
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 130,576 + BPHYT_RS20355 0.72 +1.0 130,842 + -0.4 131,012 - BPHYT_RS20360 0.15 +0.3 131,036 + +2.1 131,037 - BPHYT_RS20360 0.23 -0.1 131,051 + BPHYT_RS20360 0.28 -0.3 131,285 + +0.3 131,285 + +0.6 131,288 - -1.6 131,404 + BPHYT_RS20365 0.11 +1.6 131,491 + BPHYT_RS20365 0.20 +0.1 132,132 - -0.9 132,132 - +0.4 132,365 + +0.6 132,366 - -0.5 132,569 + BPHYT_RS20370 0.13 +0.7 132,569 + BPHYT_RS20370 0.13 -0.1 132,570 - BPHYT_RS20370 0.13 -0.6 132,570 - BPHYT_RS20370 0.13 +0.1 133,166 + BPHYT_RS20370 0.60 -1.2 133,169 - BPHYT_RS20370 0.60 +1.1 133,172 + BPHYT_RS20370 0.61 -0.7
Or see this region's nucleotide sequence