Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02155

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02150 and BPHYT_RS02155 are separated by 33 nucleotidesBPHYT_RS02155 and BPHYT_RS02160 overlap by 4 nucleotides BPHYT_RS02150: BPHYT_RS02150 - biotin synthase, at 492,275 to 493,360 _RS02150 BPHYT_RS02155: BPHYT_RS02155 - dithiobiotin synthetase, at 493,394 to 494,137 _RS02155 BPHYT_RS02160: BPHYT_RS02160 - 8-amino-7-oxononanoate synthase, at 494,134 to 495,318 _RS02160 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2 3at 492.778 kb on - strand, within BPHYT_RS02150at 492.837 kb on + strand, within BPHYT_RS02150at 492.926 kb on + strand, within BPHYT_RS02150at 493.374 kb on - strandat 493.383 kb on + strandat 493.384 kb on - strandat 493.384 kb on - strandat 493.395 kb on + strandat 493.521 kb on + strand, within BPHYT_RS02155at 493.522 kb on - strand, within BPHYT_RS02155at 493.825 kb on + strand, within BPHYT_RS02155at 493.825 kb on + strand, within BPHYT_RS02155at 493.825 kb on + strand, within BPHYT_RS02155at 493.897 kb on - strand, within BPHYT_RS02155at 493.964 kb on - strand, within BPHYT_RS02155at 493.970 kb on + strand, within BPHYT_RS02155at 494.106 kb on - strandat 494.516 kb on + strand, within BPHYT_RS02160at 494.859 kb on - strand, within BPHYT_RS02160at 494.859 kb on - strand, within BPHYT_RS02160at 494.982 kb on - strand, within BPHYT_RS02160

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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492,778 - BPHYT_RS02150 0.46 +1.1
492,837 + BPHYT_RS02150 0.52 +0.8
492,926 + BPHYT_RS02150 0.60 +0.5
493,374 - -0.1
493,383 + +1.0
493,384 - -2.1
493,384 - +0.2
493,395 + +0.3
493,521 + BPHYT_RS02155 0.17 -2.7
493,522 - BPHYT_RS02155 0.17 +0.7
493,825 + BPHYT_RS02155 0.58 -2.0
493,825 + BPHYT_RS02155 0.58 -1.4
493,825 + BPHYT_RS02155 0.58 -1.7
493,897 - BPHYT_RS02155 0.68 +3.3
493,964 - BPHYT_RS02155 0.77 -0.6
493,970 + BPHYT_RS02155 0.77 -1.6
494,106 - +0.2
494,516 + BPHYT_RS02160 0.32 -1.6
494,859 - BPHYT_RS02160 0.61 +0.1
494,859 - BPHYT_RS02160 0.61 +0.1
494,982 - BPHYT_RS02160 0.72 -0.4

Or see this region's nucleotide sequence