Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30290

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30285 and BPHYT_RS30290 are separated by 411 nucleotidesBPHYT_RS30290 and BPHYT_RS30295 are separated by 56 nucleotides BPHYT_RS30285: BPHYT_RS30285 - succinate-semialdehyde dehydrogenase, at 2,349,850 to 2,351,322 _RS30285 BPHYT_RS30290: BPHYT_RS30290 - MFS transporter, at 2,351,734 to 2,353,092 _RS30290 BPHYT_RS30295: BPHYT_RS30295 - acyl-CoA dehydrogenase, at 2,353,149 to 2,354,366 _RS30295 Position (kb) 2351 2352 2353 2354Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2350.750 kb on + strand, within BPHYT_RS30285at 2351.245 kb on + strandat 2351.281 kb on + strandat 2351.281 kb on + strandat 2351.282 kb on - strandat 2351.282 kb on - strandat 2351.297 kb on - strandat 2351.842 kb on + strandat 2351.842 kb on + strandat 2352.088 kb on + strand, within BPHYT_RS30290at 2353.522 kb on - strand, within BPHYT_RS30295

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,350,750 + BPHYT_RS30285 0.61 -0.8
2,351,245 + -0.4
2,351,281 + +0.2
2,351,281 + -2.3
2,351,282 - -1.0
2,351,282 - +2.4
2,351,297 - +4.1
2,351,842 + -1.1
2,351,842 + -0.0
2,352,088 + BPHYT_RS30290 0.26 +0.9
2,353,522 - BPHYT_RS30295 0.31 -0.4

Or see this region's nucleotide sequence