Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20240

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20235 and BPHYT_RS20240 overlap by 4 nucleotidesBPHYT_RS20240 and BPHYT_RS20245 are separated by 5 nucleotides BPHYT_RS20235: BPHYT_RS20235 - iron ABC transporter, at 83,827 to 85,935 _RS20235 BPHYT_RS20240: BPHYT_RS20240 - iron reductase, at 85,932 to 86,750 _RS20240 BPHYT_RS20245: BPHYT_RS20245 - iron ABC transporter substrate-binding protein, at 86,756 to 87,856 _RS20245 Position (kb) 85 86 87Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 85.480 kb on + strand, within BPHYT_RS20235at 85.480 kb on + strand, within BPHYT_RS20235at 85.480 kb on + strand, within BPHYT_RS20235at 85.481 kb on - strand, within BPHYT_RS20235at 86.202 kb on + strand, within BPHYT_RS20240at 86.203 kb on - strand, within BPHYT_RS20240at 86.205 kb on + strand, within BPHYT_RS20240at 86.205 kb on + strand, within BPHYT_RS20240at 86.206 kb on - strand, within BPHYT_RS20240at 86.478 kb on + strand, within BPHYT_RS20240at 86.650 kb on + strand, within BPHYT_RS20240at 86.651 kb on - strand, within BPHYT_RS20240at 86.651 kb on - strand, within BPHYT_RS20240at 86.651 kb on - strand, within BPHYT_RS20240at 86.655 kb on + strand, within BPHYT_RS20240at 86.702 kb on - strandat 86.867 kb on + strand, within BPHYT_RS20245at 87.089 kb on + strand, within BPHYT_RS20245at 87.092 kb on + strand, within BPHYT_RS20245at 87.275 kb on + strand, within BPHYT_RS20245at 87.276 kb on - strand, within BPHYT_RS20245at 87.593 kb on + strand, within BPHYT_RS20245

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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85,480 + BPHYT_RS20235 0.78 -3.6
85,480 + BPHYT_RS20235 0.78 -1.8
85,480 + BPHYT_RS20235 0.78 -1.0
85,481 - BPHYT_RS20235 0.78 -0.2
86,202 + BPHYT_RS20240 0.33 +0.3
86,203 - BPHYT_RS20240 0.33 -3.8
86,205 + BPHYT_RS20240 0.33 +0.0
86,205 + BPHYT_RS20240 0.33 -0.3
86,206 - BPHYT_RS20240 0.33 -2.9
86,478 + BPHYT_RS20240 0.67 -1.4
86,650 + BPHYT_RS20240 0.88 -2.9
86,651 - BPHYT_RS20240 0.88 -2.8
86,651 - BPHYT_RS20240 0.88 -2.2
86,651 - BPHYT_RS20240 0.88 -1.8
86,655 + BPHYT_RS20240 0.88 -0.2
86,702 - -2.7
86,867 + BPHYT_RS20245 0.10 +0.0
87,089 + BPHYT_RS20245 0.30 -2.5
87,092 + BPHYT_RS20245 0.31 -1.4
87,275 + BPHYT_RS20245 0.47 -1.7
87,276 - BPHYT_RS20245 0.47 -2.4
87,593 + BPHYT_RS20245 0.76 -1.3

Or see this region's nucleotide sequence