Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08095

Experiment: L-tyrosine 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08090 and PFLU_RS08095 overlap by 1 nucleotidesPFLU_RS08095 and PFLU_RS08100 are separated by 9 nucleotides PFLU_RS08090: PFLU_RS08090 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 1,804,610 to 1,805,695 _RS08090 PFLU_RS08095: PFLU_RS08095 - prephenate dehydratase, at 1,805,695 to 1,806,789 _RS08095 PFLU_RS08100: PFLU_RS08100 - histidinol-phosphate transaminase, at 1,806,799 to 1,807,911 _RS08100 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1806.186 kb on + strand, within PFLU_RS08095at 1806.795 kb on + strandat 1806.853 kb on + strandat 1806.853 kb on + strandat 1806.853 kb on + strandat 1806.853 kb on + strandat 1806.853 kb on + strandat 1807.098 kb on + strand, within PFLU_RS08100at 1807.098 kb on + strand, within PFLU_RS08100at 1807.123 kb on + strand, within PFLU_RS08100at 1807.123 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.630 kb on + strand, within PFLU_RS08100

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine 10 mM (C)
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1,806,186 + PFLU_RS08095 0.45 -0.6
1,806,795 + +0.4
1,806,853 + +1.0
1,806,853 + +1.4
1,806,853 + +1.9
1,806,853 + +0.2
1,806,853 + +0.6
1,807,098 + PFLU_RS08100 0.27 +0.2
1,807,098 + PFLU_RS08100 0.27 +0.2
1,807,123 + PFLU_RS08100 0.29 +0.4
1,807,123 + PFLU_RS08100 0.29 -0.4
1,807,396 + PFLU_RS08100 0.54 +0.4
1,807,396 + PFLU_RS08100 0.54 +2.8
1,807,396 + PFLU_RS08100 0.54 -0.3
1,807,396 + PFLU_RS08100 0.54 -1.9
1,807,396 + PFLU_RS08100 0.54 -0.4
1,807,396 + PFLU_RS08100 0.54 +0.6
1,807,396 + PFLU_RS08100 0.54 +0.6
1,807,396 + PFLU_RS08100 0.54 +0.6
1,807,396 + PFLU_RS08100 0.54 -0.9
1,807,396 + PFLU_RS08100 0.54 +2.2
1,807,396 + PFLU_RS08100 0.54 +1.4
1,807,396 + PFLU_RS08100 0.54 +1.2
1,807,396 + PFLU_RS08100 0.54 -1.7
1,807,396 + PFLU_RS08100 0.54 +2.7
1,807,396 + PFLU_RS08100 0.54 +0.0
1,807,396 + PFLU_RS08100 0.54 +1.4
1,807,396 + PFLU_RS08100 0.54 -1.9
1,807,396 + PFLU_RS08100 0.54 +1.3
1,807,630 + PFLU_RS08100 0.75 +0.2

Or see this region's nucleotide sequence