Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23070

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23065 and BPHYT_RS23070 are separated by 40 nucleotidesBPHYT_RS23070 and BPHYT_RS23075 are separated by 162 nucleotides BPHYT_RS23065: BPHYT_RS23065 - MFS transporter, at 736,773 to 738,239 _RS23065 BPHYT_RS23070: BPHYT_RS23070 - hypothetical protein, at 738,280 to 740,211 _RS23070 BPHYT_RS23075: BPHYT_RS23075 - GntR family transcriptional regulator, at 740,374 to 741,030 _RS23075 Position (kb) 738 739 740 741Strain fitness (log2 ratio) -1 0 1 2 3at 737.790 kb on + strand, within BPHYT_RS23065at 737.893 kb on + strand, within BPHYT_RS23065at 737.897 kb on + strand, within BPHYT_RS23065at 738.237 kb on + strandat 738.271 kb on + strandat 738.303 kb on + strandat 738.304 kb on - strandat 738.304 kb on - strandat 738.652 kb on - strand, within BPHYT_RS23070at 738.806 kb on + strand, within BPHYT_RS23070at 738.806 kb on + strand, within BPHYT_RS23070at 738.807 kb on - strand, within BPHYT_RS23070at 739.050 kb on + strand, within BPHYT_RS23070at 739.856 kb on + strand, within BPHYT_RS23070at 739.992 kb on - strand, within BPHYT_RS23070at 740.267 kb on - strandat 740.267 kb on - strandat 740.295 kb on + strandat 740.844 kb on - strand, within BPHYT_RS23075at 741.201 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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737,790 + BPHYT_RS23065 0.69 +2.8
737,893 + BPHYT_RS23065 0.76 +0.9
737,897 + BPHYT_RS23065 0.77 +1.4
738,237 + +0.2
738,271 + -0.3
738,303 + +0.0
738,304 - +1.3
738,304 - +1.9
738,652 - BPHYT_RS23070 0.19 -1.6
738,806 + BPHYT_RS23070 0.27 -1.1
738,806 + BPHYT_RS23070 0.27 +0.7
738,807 - BPHYT_RS23070 0.27 +0.3
739,050 + BPHYT_RS23070 0.40 +0.3
739,856 + BPHYT_RS23070 0.82 +1.3
739,992 - BPHYT_RS23070 0.89 -0.1
740,267 - -1.5
740,267 - -0.2
740,295 + -0.5
740,844 - BPHYT_RS23075 0.72 +3.6
741,201 + -1.0

Or see this region's nucleotide sequence