Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22020

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22015 and BPHYT_RS22020 are separated by 303 nucleotidesBPHYT_RS22020 and BPHYT_RS22025 are separated by 51 nucleotides BPHYT_RS22015: BPHYT_RS22015 - spermidine/putrescine ABC transporter ATPase, at 493,870 to 494,961 _RS22015 BPHYT_RS22020: BPHYT_RS22020 - IclR family transcriptional regulator, at 495,265 to 496,143 _RS22020 BPHYT_RS22025: BPHYT_RS22025 - porin, at 496,195 to 497,784 _RS22025 Position (kb) 495 496 497Strain fitness (log2 ratio) -1 0 1 2 3 4at 494.307 kb on - strand, within BPHYT_RS22015at 494.325 kb on + strand, within BPHYT_RS22015at 494.590 kb on - strand, within BPHYT_RS22015at 495.104 kb on + strandat 495.105 kb on - strandat 495.226 kb on - strandat 495.572 kb on + strand, within BPHYT_RS22020at 495.841 kb on + strand, within BPHYT_RS22020at 496.262 kb on + strandat 496.332 kb on - strandat 496.506 kb on - strand, within BPHYT_RS22025at 496.522 kb on - strand, within BPHYT_RS22025at 496.559 kb on + strand, within BPHYT_RS22025at 496.559 kb on + strand, within BPHYT_RS22025at 496.587 kb on - strand, within BPHYT_RS22025at 496.591 kb on - strand, within BPHYT_RS22025at 496.591 kb on - strand, within BPHYT_RS22025at 496.748 kb on + strand, within BPHYT_RS22025at 496.850 kb on + strand, within BPHYT_RS22025at 496.850 kb on + strand, within BPHYT_RS22025at 496.851 kb on - strand, within BPHYT_RS22025at 496.898 kb on + strand, within BPHYT_RS22025at 496.898 kb on + strand, within BPHYT_RS22025at 496.898 kb on + strand, within BPHYT_RS22025at 496.928 kb on + strand, within BPHYT_RS22025at 497.109 kb on - strand, within BPHYT_RS22025

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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494,307 - BPHYT_RS22015 0.40 -0.6
494,325 + BPHYT_RS22015 0.42 -0.1
494,590 - BPHYT_RS22015 0.66 +1.2
495,104 + -0.4
495,105 - -1.0
495,226 - +0.5
495,572 + BPHYT_RS22020 0.35 +0.1
495,841 + BPHYT_RS22020 0.66 +0.5
496,262 + +0.9
496,332 - +1.2
496,506 - BPHYT_RS22025 0.20 +4.6
496,522 - BPHYT_RS22025 0.21 +0.8
496,559 + BPHYT_RS22025 0.23 +0.9
496,559 + BPHYT_RS22025 0.23 +0.7
496,587 - BPHYT_RS22025 0.25 +0.1
496,591 - BPHYT_RS22025 0.25 +1.2
496,591 - BPHYT_RS22025 0.25 +0.7
496,748 + BPHYT_RS22025 0.35 +0.2
496,850 + BPHYT_RS22025 0.41 +1.0
496,850 + BPHYT_RS22025 0.41 -1.3
496,851 - BPHYT_RS22025 0.41 +0.3
496,898 + BPHYT_RS22025 0.44 +0.5
496,898 + BPHYT_RS22025 0.44 -0.0
496,898 + BPHYT_RS22025 0.44 +3.1
496,928 + BPHYT_RS22025 0.46 -0.4
497,109 - BPHYT_RS22025 0.57 +0.2

Or see this region's nucleotide sequence