Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20125

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20120 and BPHYT_RS20125 are separated by 396 nucleotidesBPHYT_RS20125 and BPHYT_RS20130 are separated by 826 nucleotides BPHYT_RS20120: BPHYT_RS20120 - porin, at 56,775 to 57,899 _RS20120 BPHYT_RS20125: BPHYT_RS20125 - histidine kinase, at 58,296 to 58,511 _RS20125 BPHYT_RS20130: BPHYT_RS20130 - diguanylate phosphodiesterase, at 59,338 to 60,105 _RS20130 Position (kb) 58 59Strain fitness (log2 ratio) -1 0 1 2 3at 57.318 kb on + strand, within BPHYT_RS20120at 57.528 kb on + strand, within BPHYT_RS20120at 57.808 kb on - strandat 57.974 kb on + strandat 57.975 kb on - strandat 58.135 kb on - strandat 58.696 kb on - strandat 58.897 kb on + strandat 58.898 kb on - strandat 58.944 kb on - strandat 59.046 kb on - strandat 59.146 kb on - strandat 59.159 kb on + strandat 59.160 kb on - strandat 59.175 kb on + strandat 59.230 kb on + strandat 59.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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57,318 + BPHYT_RS20120 0.48 +3.1
57,528 + BPHYT_RS20120 0.67 -1.3
57,808 - +0.5
57,974 + +0.5
57,975 - -0.4
58,135 - +0.8
58,696 - -0.9
58,897 + +1.0
58,898 - -0.4
58,944 - -0.1
59,046 - -0.1
59,146 - -0.6
59,159 + +0.1
59,160 - -0.4
59,175 + +0.5
59,230 + +0.7
59,243 - -0.4

Or see this region's nucleotide sequence