Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS29935

Experiment: L-tyrosine 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 10 mM (C)
6,659,377	+				+0.2
6,659,377	+				+0.5
6,659,377	+				+2.0
6,659,377	+				+1.6
6,659,378	-				+0.8
6,659,378	-				-0.6
6,659,378	-				-1.6
6,659,378	-				-2.5
6,659,378	-				-1.3
6,659,383	+				-2.7
6,659,383	+				-1.7
6,659,383	+				-1.1
6,659,384	-				+1.0
6,659,384	-				-1.3
6,659,384	-				+0.1
6,659,384	-				-0.0
6,659,384	-				+0.8
6,659,384	-				-1.9
6,659,384	-				-0.7
6,659,384	-				+1.2
6,659,384	-				-1.8
6,659,412	+				-0.2
6,659,413	-				+0.7
6,659,413	-				+1.0
6,659,413	-				+1.9
6,659,413	-				-1.6
6,659,462	-				-1.6
6,659,462	-				+1.6
6,659,499	+		PFLU_RS29930	0.13	+1.1
6,659,661	+		PFLU_RS29930	0.32	+0.5
6,659,661	+		PFLU_RS29930	0.32	-0.5
6,659,661	+		PFLU_RS29930	0.32	+0.2
6,659,662	-		PFLU_RS29930	0.32	+1.2
6,659,662	-		PFLU_RS29930	0.32	+0.2
6,659,662	-		PFLU_RS29930	0.32	-0.4
6,659,662	-		PFLU_RS29930	0.32	-2.0
6,659,712	+		PFLU_RS29930	0.38	+0.5
6,659,712	+		PFLU_RS29930	0.38	-0.4
6,659,713	-		PFLU_RS29930	0.38	-0.1
6,659,713	-		PFLU_RS29930	0.38	-1.3
6,659,923	+		PFLU_RS29930	0.62	-1.4
6,659,923	+		PFLU_RS29930	0.62	-0.6
6,659,923	+		PFLU_RS29930	0.62	-1.6
6,659,923	+		PFLU_RS29930	0.62	-1.0
6,659,923	+		PFLU_RS29930	0.62	+2.5
6,659,923	+		PFLU_RS29930	0.62	-0.3
6,659,923	+		PFLU_RS29930	0.62	+0.2
6,659,924	-		PFLU_RS29930	0.62	-1.3
6,659,924	-		PFLU_RS29930	0.62	+0.9
6,659,924	-		PFLU_RS29930	0.62	-2.3
6,659,924	-		PFLU_RS29930	0.62	-0.7
6,659,924	-		PFLU_RS29930	0.62	+0.8
6,659,924	-		PFLU_RS29930	0.62	+1.2
6,659,924	-		PFLU_RS29930	0.62	-0.4
6,659,924	-		PFLU_RS29930	0.62	+3.4
6,659,924	-		PFLU_RS29930	0.62	-1.7
6,659,924	-		PFLU_RS29930	0.62	+0.5
6,659,924	-		PFLU_RS29930	0.62	+0.1
6,659,924	-		PFLU_RS29930	0.62	-1.1
6,659,924	-		PFLU_RS29930	0.62	-2.6
6,660,001	+		PFLU_RS29930	0.71	+0.3
6,660,002	-		PFLU_RS29930	0.71	+0.7
6,660,110	-		PFLU_RS29930	0.83	-0.2
6,660,269	+				+0.8
6,660,297	+				+0.8
6,660,297	+				+1.9
6,660,297	+				+1.2
6,660,298	-				+0.9
6,660,298	-				-1.0
6,660,305	+				+0.0
6,660,316	+				-1.6
6,660,316	+				+1.0
6,660,316	+				+2.1
6,660,316	+				+2.1
6,660,316	+				+0.3
6,660,317	-				-1.6
6,660,317	-				+1.1
6,660,317	-				+0.0
6,660,317	-				+1.4
6,660,317	-				+1.7
6,660,317	-				-1.9
6,660,317	-				-0.7
6,660,317	-				-0.9
6,660,318	+				+0.1
6,660,318	+				+0.8
6,660,319	-				+0.9
6,660,319	-				-0.9
6,660,319	-				+0.5
6,660,319	-				-0.9
6,660,319	-				+1.3
6,660,319	-				+0.1
6,660,319	-				+1.2
6,660,340	+				+0.4
6,660,340	+				-1.0
6,660,340	+				-0.3
6,660,340	+				+0.5
6,660,340	+				-2.1
6,660,340	+				-0.8
6,660,340	+				+1.3
6,660,340	+				+0.6
6,660,340	+				+0.8
6,660,340	+				+0.6
6,660,340	+				-1.2
6,660,340	+				-1.3
6,660,340	+				+0.2
6,660,340	+				-1.7
6,660,340	+				+1.5
6,660,341	-				+0.3
6,660,341	-				-0.7
6,660,341	-				-0.4
6,660,341	-				+0.8
6,660,341	-				-0.7
6,660,341	-				-1.8
6,660,341	-				+0.4
6,660,341	-				-1.3
6,660,341	-				+1.1
6,660,341	-				-0.4
6,660,341	-				-0.7
6,660,341	-				-1.6
6,660,341	-				+1.8
6,660,341	-				-0.3
6,660,341	-				+1.2
6,660,341	-				-0.2
6,660,578	+		PFLU_RS29935	0.52	-1.1
6,660,578	+		PFLU_RS29935	0.52	-1.1
6,660,578	+		PFLU_RS29935	0.52	-0.7
6,660,578	+		PFLU_RS29935	0.52	-2.3
6,660,578	+		PFLU_RS29935	0.52	-1.9
6,660,578	+		PFLU_RS29935	0.52	-1.3
6,660,578	+		PFLU_RS29935	0.52	+0.0
6,660,578	+		PFLU_RS29935	0.52	-0.9
6,660,579	-		PFLU_RS29935	0.52	+1.2
6,660,579	-		PFLU_RS29935	0.52	+0.1
6,660,579	-		PFLU_RS29935	0.52	-0.5
6,660,579	-		PFLU_RS29935	0.52	+0.6
6,660,579	-		PFLU_RS29935	0.52	-0.2
6,660,579	-		PFLU_RS29935	0.52	+0.5
6,660,579	-		PFLU_RS29935	0.52	-1.4
6,660,579	-		PFLU_RS29935	0.52	+0.5
6,660,579	-		PFLU_RS29935	0.52	-0.8
6,660,579	-		PFLU_RS29935	0.52	+1.9
6,660,579	-		PFLU_RS29935	0.52	+1.8
6,660,579	-		PFLU_RS29935	0.52	+0.2
6,660,579	-		PFLU_RS29935	0.52	-1.3
6,660,579	-		PFLU_RS29935	0.52	+2.2
6,660,579	-		PFLU_RS29935	0.52	+0.5
6,660,579	-		PFLU_RS29935	0.52	-0.3
6,660,579	-		PFLU_RS29935	0.52	+0.5
6,660,579	-		PFLU_RS29935	0.52	-0.6
6,660,579	-		PFLU_RS29935	0.52	+1.2
6,660,579	-		PFLU_RS29935	0.52	+0.9
6,660,582	+		PFLU_RS29935	0.53	+0.9
6,660,582	+		PFLU_RS29935	0.53	-0.2
6,660,582	+		PFLU_RS29935	0.53	-0.3
6,660,582	+		PFLU_RS29935	0.53	-0.7
6,660,582	+		PFLU_RS29935	0.53	-0.2
6,660,582	+		PFLU_RS29935	0.53	-0.5
6,660,583	-		PFLU_RS29935	0.53	-0.1
6,660,583	-		PFLU_RS29935	0.53	-1.1
6,660,583	-		PFLU_RS29935	0.53	-0.1
6,660,583	-		PFLU_RS29935	0.53	+1.4
6,660,583	-		PFLU_RS29935	0.53	-1.3
6,660,583	-		PFLU_RS29935	0.53	+1.8
6,660,881	-		PFLU_RS29940	0.12	+0.2
6,661,115	-		PFLU_RS29940	0.37	-0.4
6,661,189	-		PFLU_RS29940	0.44	-0.8
6,661,189	-		PFLU_RS29940	0.44	+1.9
6,661,263	-		PFLU_RS29940	0.52	+1.2
6,661,263	-		PFLU_RS29940	0.52	-0.3
6,661,465	+		PFLU_RS29940	0.73	+0.7
6,661,487	+		PFLU_RS29940	0.75	+1.0
6,661,487	+		PFLU_RS29940	0.75	-1.3
6,661,488	-		PFLU_RS29940	0.75	-0.3
6,661,488	-		PFLU_RS29940	0.75	-0.8
6,661,488	-		PFLU_RS29940	0.75	+1.8
6,661,589	+		PFLU_RS29940	0.86	+1.5
6,661,589	+		PFLU_RS29940	0.86	-0.6
6,661,589	+		PFLU_RS29940	0.86	+1.9
6,661,589	+		PFLU_RS29940	0.86	+1.0
6,661,589	+		PFLU_RS29940	0.86	+0.4
6,661,590	-		PFLU_RS29940	0.86	+1.3
6,661,746	+				-2.3
6,661,746	+				+0.3
6,661,746	+				+0.8
6,661,747	-				+0.2
6,661,747	-				-2.6
6,661,747	-				-1.0
6,661,762	-				-0.3
6,661,762	-				-1.9