Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31400

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS31395 and BPHYT_RS31400 are separated by 306 nucleotidesBPHYT_RS31400 and BPHYT_RS31405 are separated by 373 nucleotides BPHYT_RS31395: BPHYT_RS31395 - thiamine pyrophosphate-binding protein, at 2,596,740 to 2,598,488 _RS31395 BPHYT_RS31400: BPHYT_RS31400 - methyl-accepting chemotaxis protein, at 2,598,795 to 2,600,540 _RS31400 BPHYT_RS31405: BPHYT_RS31405 - short-chain dehydrogenase, at 2,600,914 to 2,601,597 _RS31405 Position (kb) 2598 2599 2600 2601Strain fitness (log2 ratio) -2 -1 0 1 2at 2597.904 kb on - strand, within BPHYT_RS31395at 2598.388 kb on + strandat 2598.488 kb on + strandat 2599.424 kb on + strand, within BPHYT_RS31400at 2600.222 kb on - strand, within BPHYT_RS31400at 2600.641 kb on + strandat 2600.642 kb on - strandat 2600.668 kb on - strandat 2601.290 kb on - strand, within BPHYT_RS31405

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,597,904 - BPHYT_RS31395 0.67 +2.1
2,598,388 + -0.4
2,598,488 + +0.2
2,599,424 + BPHYT_RS31400 0.36 -0.1
2,600,222 - BPHYT_RS31400 0.82 -2.1
2,600,641 + -1.3
2,600,642 - +0.2
2,600,668 - -0.8
2,601,290 - BPHYT_RS31405 0.55 -0.6

Or see this region's nucleotide sequence