Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27115

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27110 and BPHYT_RS27115 are separated by 55 nucleotidesBPHYT_RS27115 and BPHYT_RS27120 are separated by 222 nucleotidesBPHYT_RS27120 and BPHYT_RS27125 are separated by 72 nucleotides BPHYT_RS27110: BPHYT_RS27110 - dehydrogenase, at 1,659,438 to 1,660,541 _RS27110 BPHYT_RS27115: BPHYT_RS27115 - peptidase M20, at 1,660,597 to 1,662,057 _RS27115 BPHYT_RS27120: BPHYT_RS27120 - hypothetical protein, at 1,662,280 to 1,662,591 _RS27120 BPHYT_RS27125: BPHYT_RS27125 - hypothetical protein, at 1,662,664 to 1,662,936 _RS27125 Position (kb) 1660 1661 1662 1663Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 1659.819 kb on - strand, within BPHYT_RS27110at 1659.937 kb on + strand, within BPHYT_RS27110at 1660.354 kb on + strand, within BPHYT_RS27110at 1660.355 kb on - strand, within BPHYT_RS27110at 1660.477 kb on + strandat 1660.478 kb on - strandat 1660.478 kb on - strandat 1660.747 kb on + strand, within BPHYT_RS27115at 1660.784 kb on + strand, within BPHYT_RS27115at 1660.785 kb on - strand, within BPHYT_RS27115at 1660.785 kb on - strand, within BPHYT_RS27115at 1661.432 kb on + strand, within BPHYT_RS27115at 1661.504 kb on + strand, within BPHYT_RS27115at 1661.505 kb on - strand, within BPHYT_RS27115at 1661.519 kb on + strand, within BPHYT_RS27115at 1661.519 kb on + strand, within BPHYT_RS27115at 1661.615 kb on + strand, within BPHYT_RS27115at 1661.616 kb on - strand, within BPHYT_RS27115at 1661.652 kb on - strand, within BPHYT_RS27115at 1661.894 kb on + strand, within BPHYT_RS27115at 1662.100 kb on + strandat 1662.446 kb on - strand, within BPHYT_RS27120at 1662.830 kb on + strand, within BPHYT_RS27125

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,659,819 - BPHYT_RS27110 0.35 -0.5
1,659,937 + BPHYT_RS27110 0.45 +0.8
1,660,354 + BPHYT_RS27110 0.83 -0.3
1,660,355 - BPHYT_RS27110 0.83 +0.2
1,660,477 + +0.0
1,660,478 - +0.5
1,660,478 - -0.1
1,660,747 + BPHYT_RS27115 0.10 +0.2
1,660,784 + BPHYT_RS27115 0.13 +0.3
1,660,785 - BPHYT_RS27115 0.13 -0.0
1,660,785 - BPHYT_RS27115 0.13 +6.3
1,661,432 + BPHYT_RS27115 0.57 -0.2
1,661,504 + BPHYT_RS27115 0.62 +0.3
1,661,505 - BPHYT_RS27115 0.62 +1.6
1,661,519 + BPHYT_RS27115 0.63 +0.4
1,661,519 + BPHYT_RS27115 0.63 +0.2
1,661,615 + BPHYT_RS27115 0.70 +0.9
1,661,616 - BPHYT_RS27115 0.70 -0.7
1,661,652 - BPHYT_RS27115 0.72 -0.1
1,661,894 + BPHYT_RS27115 0.89 +0.3
1,662,100 + -0.7
1,662,446 - BPHYT_RS27120 0.53 +0.6
1,662,830 + BPHYT_RS27125 0.61 -0.1

Or see this region's nucleotide sequence