Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26555

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26550 and BPHYT_RS26555 are separated by 269 nucleotidesBPHYT_RS26555 and BPHYT_RS26560 are separated by 147 nucleotidesBPHYT_RS26560 and BPHYT_RS26565 overlap by 4 nucleotides BPHYT_RS26550: BPHYT_RS26550 - Fis family transcriptional regulator, at 1,525,404 to 1,526,768 _RS26550 BPHYT_RS26555: BPHYT_RS26555 - multidrug MFS transporter, at 1,527,038 to 1,528,201 _RS26555 BPHYT_RS26560: BPHYT_RS26560 - murein hydrolase transporter LrgA, at 1,528,349 to 1,528,720 _RS26560 BPHYT_RS26565: BPHYT_RS26565 - membrane protein, at 1,528,717 to 1,529,457 _RS26565 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -1 0 1 2at 1526.123 kb on - strand, within BPHYT_RS26550at 1526.732 kb on - strandat 1527.585 kb on + strand, within BPHYT_RS26555at 1527.700 kb on - strand, within BPHYT_RS26555at 1528.050 kb on + strand, within BPHYT_RS26555at 1528.244 kb on - strandat 1528.308 kb on - strandat 1528.539 kb on + strand, within BPHYT_RS26560

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,526,123 - BPHYT_RS26550 0.53 -0.1
1,526,732 - -0.7
1,527,585 + BPHYT_RS26555 0.47 -0.7
1,527,700 - BPHYT_RS26555 0.57 -1.3
1,528,050 + BPHYT_RS26555 0.87 -1.0
1,528,244 - +0.6
1,528,308 - +0.3
1,528,539 + BPHYT_RS26560 0.51 +2.4

Or see this region's nucleotide sequence