Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25325

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25320 and BPHYT_RS25325 are separated by 423 nucleotidesBPHYT_RS25325 and BPHYT_RS25330 are separated by 118 nucleotides BPHYT_RS25320: BPHYT_RS25320 - cobalamin biosynthesis protein CobW, at 1,254,139 to 1,255,122 _RS25320 BPHYT_RS25325: BPHYT_RS25325 - SARP family transcriptional regulator, at 1,255,546 to 1,257,096 _RS25325 BPHYT_RS25330: BPHYT_RS25330 - hypothetical protein, at 1,257,215 to 1,258,597 _RS25330 Position (kb) 1255 1256 1257 1258Strain fitness (log2 ratio) -2 -1 0 1at 1254.867 kb on - strand, within BPHYT_RS25320at 1254.877 kb on + strand, within BPHYT_RS25320at 1254.877 kb on + strand, within BPHYT_RS25320at 1255.137 kb on - strandat 1255.137 kb on - strandat 1255.346 kb on - strandat 1255.728 kb on + strand, within BPHYT_RS25325at 1256.541 kb on - strand, within BPHYT_RS25325at 1256.541 kb on - strand, within BPHYT_RS25325at 1256.776 kb on - strand, within BPHYT_RS25325at 1257.376 kb on + strand, within BPHYT_RS25330at 1257.408 kb on + strand, within BPHYT_RS25330at 1257.433 kb on + strand, within BPHYT_RS25330at 1257.827 kb on + strand, within BPHYT_RS25330at 1257.872 kb on - strand, within BPHYT_RS25330

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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1,254,867 - BPHYT_RS25320 0.74 -0.4
1,254,877 + BPHYT_RS25320 0.75 +0.0
1,254,877 + BPHYT_RS25320 0.75 -1.5
1,255,137 - +0.3
1,255,137 - -0.4
1,255,346 - -0.2
1,255,728 + BPHYT_RS25325 0.12 -0.3
1,256,541 - BPHYT_RS25325 0.64 -0.1
1,256,541 - BPHYT_RS25325 0.64 +1.2
1,256,776 - BPHYT_RS25325 0.79 +1.7
1,257,376 + BPHYT_RS25330 0.12 -0.5
1,257,408 + BPHYT_RS25330 0.14 -1.0
1,257,433 + BPHYT_RS25330 0.16 -0.2
1,257,827 + BPHYT_RS25330 0.44 +0.1
1,257,872 - BPHYT_RS25330 0.48 -2.5

Or see this region's nucleotide sequence