Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23950

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23945 and BPHYT_RS23950 are separated by 60 nucleotidesBPHYT_RS23950 and BPHYT_RS23955 are separated by 114 nucleotides BPHYT_RS23945: BPHYT_RS23945 - MFS transporter, at 936,962 to 938,263 _RS23945 BPHYT_RS23950: BPHYT_RS23950 - DMT family permease, at 938,324 to 939,244 _RS23950 BPHYT_RS23955: BPHYT_RS23955 - LysR family transcriptional regulator, at 939,359 to 940,240 _RS23955 Position (kb) 938 939 940Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 937.341 kb on - strand, within BPHYT_RS23945at 937.394 kb on + strand, within BPHYT_RS23945at 937.395 kb on - strand, within BPHYT_RS23945at 937.460 kb on + strand, within BPHYT_RS23945at 937.461 kb on - strand, within BPHYT_RS23945at 937.493 kb on + strand, within BPHYT_RS23945at 938.155 kb on + strandat 938.155 kb on + strandat 938.156 kb on - strandat 938.156 kb on - strandat 938.270 kb on + strandat 938.560 kb on - strand, within BPHYT_RS23950at 938.784 kb on + strand, within BPHYT_RS23950at 938.784 kb on + strand, within BPHYT_RS23950at 938.801 kb on + strand, within BPHYT_RS23950at 938.802 kb on - strand, within BPHYT_RS23950at 939.244 kb on + strandat 939.278 kb on - strandat 939.469 kb on + strand, within BPHYT_RS23955at 939.646 kb on - strand, within BPHYT_RS23955at 939.874 kb on + strand, within BPHYT_RS23955at 939.914 kb on + strand, within BPHYT_RS23955at 939.914 kb on + strand, within BPHYT_RS23955

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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937,341 - BPHYT_RS23945 0.29 -0.9
937,394 + BPHYT_RS23945 0.33 -0.0
937,395 - BPHYT_RS23945 0.33 -1.8
937,460 + BPHYT_RS23945 0.38 +0.2
937,461 - BPHYT_RS23945 0.38 -0.1
937,493 + BPHYT_RS23945 0.41 +0.1
938,155 + -0.8
938,155 + -0.4
938,156 - -0.4
938,156 - +1.2
938,270 + +1.2
938,560 - BPHYT_RS23950 0.26 +4.8
938,784 + BPHYT_RS23950 0.50 -1.2
938,784 + BPHYT_RS23950 0.50 -0.1
938,801 + BPHYT_RS23950 0.52 +0.3
938,802 - BPHYT_RS23950 0.52 -0.6
939,244 + +1.4
939,278 - +0.2
939,469 + BPHYT_RS23955 0.12 -0.8
939,646 - BPHYT_RS23955 0.33 -0.6
939,874 + BPHYT_RS23955 0.58 +0.5
939,914 + BPHYT_RS23955 0.63 +0.0
939,914 + BPHYT_RS23955 0.63 +0.7

Or see this region's nucleotide sequence