Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23520

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23515 and BPHYT_RS23520 are separated by 573 nucleotidesBPHYT_RS23520 and BPHYT_RS23525 are separated by 202 nucleotides BPHYT_RS23515: BPHYT_RS23515 - porin, at 842,687 to 843,859 _RS23515 BPHYT_RS23520: BPHYT_RS23520 - peroxidase, at 844,433 to 845,500 _RS23520 BPHYT_RS23525: BPHYT_RS23525 - hypothetical protein, at 845,703 to 846,050 _RS23525 Position (kb) 844 845 846Strain fitness (log2 ratio) -1 0 1at 843.501 kb on + strand, within BPHYT_RS23515at 843.843 kb on - strandat 844.771 kb on - strand, within BPHYT_RS23520at 845.224 kb on - strand, within BPHYT_RS23520at 845.704 kb on + strandat 845.709 kb on + strandat 846.007 kb on - strand, within BPHYT_RS23525at 846.342 kb on + strandat 846.414 kb on + strandat 846.453 kb on - strandat 846.487 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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843,501 + BPHYT_RS23515 0.69 -0.1
843,843 - +0.4
844,771 - BPHYT_RS23520 0.32 -1.5
845,224 - BPHYT_RS23520 0.74 -1.1
845,704 + -1.6
845,709 + -0.9
846,007 - BPHYT_RS23525 0.87 -1.2
846,342 + +0.2
846,414 + -0.1
846,453 - -0.2
846,487 + -1.3

Or see this region's nucleotide sequence