Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21710 and BPHYT_RS21715 are separated by 219 nucleotides BPHYT_RS21715 and BPHYT_RS21720 overlap by 8 nucleotides BPHYT_RS21720 and BPHYT_RS21725 are separated by 33 nucleotides
BPHYT_RS21710: BPHYT_RS21710 - DeoR faimly transcriptional regulator, at 426,574 to 428,007
_RS21710
BPHYT_RS21715: BPHYT_RS21715 - taurine ABC transporter permease, at 428,227 to 429,147
_RS21715
BPHYT_RS21720: BPHYT_RS21720 - nitrate ABC transporter ATP-binding protein, at 429,140 to 429,955
_RS21720
BPHYT_RS21725: BPHYT_RS21725 - taurine ABC transporter substrate-binding protein, at 429,989 to 431,023
_RS21725
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.298 kb on + strand, within BPHYT_RS21710 at 427.330 kb on - strand, within BPHYT_RS21710 at 427.399 kb on + strand, within BPHYT_RS21710 at 427.400 kb on - strand, within BPHYT_RS21710 at 427.712 kb on + strand, within BPHYT_RS21710 at 427.713 kb on - strand, within BPHYT_RS21710 at 427.714 kb on + strand, within BPHYT_RS21710 at 427.857 kb on - strand, within BPHYT_RS21710 at 428.067 kb on - strand at 428.091 kb on - strand at 428.858 kb on + strand, within BPHYT_RS21715 at 428.859 kb on - strand, within BPHYT_RS21715 at 429.135 kb on + strand at 429.189 kb on + strand at 429.298 kb on + strand, within BPHYT_RS21720 at 429.298 kb on + strand, within BPHYT_RS21720 at 429.552 kb on + strand, within BPHYT_RS21720 at 429.552 kb on + strand, within BPHYT_RS21720 at 429.552 kb on + strand, within BPHYT_RS21720 at 429.739 kb on + strand, within BPHYT_RS21720 at 429.985 kb on + strand at 430.017 kb on + strand at 430.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 427,298 + BPHYT_RS21710 0.50 +0.0 427,330 - BPHYT_RS21710 0.53 +1.4 427,399 + BPHYT_RS21710 0.58 +0.5 427,400 - BPHYT_RS21710 0.58 +1.3 427,712 + BPHYT_RS21710 0.79 -0.3 427,713 - BPHYT_RS21710 0.79 -0.2 427,714 + BPHYT_RS21710 0.79 +0.3 427,857 - BPHYT_RS21710 0.89 +0.0 428,067 - +2.0 428,091 - +0.0 428,858 + BPHYT_RS21715 0.69 -3.3 428,859 - BPHYT_RS21715 0.69 -0.6 429,135 + -0.2 429,189 + -0.5 429,298 + BPHYT_RS21720 0.19 +0.6 429,298 + BPHYT_RS21720 0.19 -0.3 429,552 + BPHYT_RS21720 0.50 -0.3 429,552 + BPHYT_RS21720 0.50 -0.0 429,552 + BPHYT_RS21720 0.50 -1.1 429,739 + BPHYT_RS21720 0.73 -0.6 429,985 + -0.5 430,017 + -0.7 430,018 - -0.1
Or see this region's nucleotide sequence