Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21685

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21680 and BPHYT_RS21685 are separated by 173 nucleotidesBPHYT_RS21685 and BPHYT_RS21690 overlap by 1 nucleotides BPHYT_RS21680: BPHYT_RS21680 - amino acid permease-associated protein, at 418,298 to 419,728 _RS21680 BPHYT_RS21685: BPHYT_RS21685 - cobalamin biosynthesis protein CobS, at 419,902 to 420,858 _RS21685 BPHYT_RS21690: BPHYT_RS21690 - cobalt chelatase, at 420,858 to 422,591 _RS21690 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1at 419.132 kb on + strand, within BPHYT_RS21680at 419.232 kb on - strand, within BPHYT_RS21680at 419.373 kb on - strand, within BPHYT_RS21680at 419.439 kb on - strand, within BPHYT_RS21680at 419.532 kb on - strand, within BPHYT_RS21680at 419.827 kb on + strandat 419.828 kb on - strandat 420.159 kb on + strand, within BPHYT_RS21685at 420.237 kb on + strand, within BPHYT_RS21685at 420.515 kb on - strand, within BPHYT_RS21685at 421.076 kb on - strand, within BPHYT_RS21690at 421.303 kb on - strand, within BPHYT_RS21690

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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419,132 + BPHYT_RS21680 0.58 -0.0
419,232 - BPHYT_RS21680 0.65 -0.7
419,373 - BPHYT_RS21680 0.75 -0.4
419,439 - BPHYT_RS21680 0.80 -1.4
419,532 - BPHYT_RS21680 0.86 -0.3
419,827 + -0.0
419,828 - -0.1
420,159 + BPHYT_RS21685 0.27 -2.4
420,237 + BPHYT_RS21685 0.35 -0.6
420,515 - BPHYT_RS21685 0.64 -1.2
421,076 - BPHYT_RS21690 0.13 -0.6
421,303 - BPHYT_RS21690 0.26 +0.3

Or see this region's nucleotide sequence