Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21075 and BPHYT_RS21080 are separated by 132 nucleotides BPHYT_RS21080 and BPHYT_RS21085 overlap by 4 nucleotides BPHYT_RS21085 and BPHYT_RS21090 are separated by 19 nucleotides
BPHYT_RS21075: BPHYT_RS21075 - (2Fe-2S)-binding protein, at 289,194 to 290,252
_RS21075
BPHYT_RS21080: BPHYT_RS21080 - (2Fe-2S)-binding protein, at 290,385 to 291,500
_RS21080
BPHYT_RS21085: BPHYT_RS21085 - hypothetical protein, at 291,497 to 291,706
_RS21085
BPHYT_RS21090: BPHYT_RS21090 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 291,726 to 292,955
_RS21090
Position (kb) 290
291
292 Strain fitness (log2 ratio) -2
-1
0
1
2 at 289.545 kb on + strand, within BPHYT_RS21075 at 289.903 kb on - strand, within BPHYT_RS21075 at 289.963 kb on - strand, within BPHYT_RS21075 at 290.351 kb on - strand at 290.402 kb on - strand at 290.499 kb on + strand, within BPHYT_RS21080 at 290.764 kb on + strand, within BPHYT_RS21080 at 290.862 kb on + strand, within BPHYT_RS21080 at 290.923 kb on - strand, within BPHYT_RS21080 at 291.315 kb on - strand, within BPHYT_RS21080 at 291.867 kb on + strand, within BPHYT_RS21090 at 291.930 kb on + strand, within BPHYT_RS21090 at 291.932 kb on + strand, within BPHYT_RS21090 at 291.972 kb on + strand, within BPHYT_RS21090 at 291.973 kb on - strand, within BPHYT_RS21090 at 292.058 kb on + strand, within BPHYT_RS21090 at 292.059 kb on - strand, within BPHYT_RS21090
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 289,545 + BPHYT_RS21075 0.33 -1.1 289,903 - BPHYT_RS21075 0.67 -0.2 289,963 - BPHYT_RS21075 0.73 -0.4 290,351 - +0.5 290,402 - +2.1 290,499 + BPHYT_RS21080 0.10 +1.3 290,764 + BPHYT_RS21080 0.34 +0.3 290,862 + BPHYT_RS21080 0.43 +0.1 290,923 - BPHYT_RS21080 0.48 +2.1 291,315 - BPHYT_RS21080 0.83 +0.8 291,867 + BPHYT_RS21090 0.11 +0.3 291,930 + BPHYT_RS21090 0.17 +0.1 291,932 + BPHYT_RS21090 0.17 -2.1 291,972 + BPHYT_RS21090 0.20 +0.7 291,973 - BPHYT_RS21090 0.20 +0.4 292,058 + BPHYT_RS21090 0.27 +0.5 292,059 - BPHYT_RS21090 0.27 +1.7
Or see this region's nucleotide sequence