Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20180

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20170 and BPHYT_RS20175 are separated by 56 nucleotidesBPHYT_RS20175 and BPHYT_RS20180 overlap by 4 nucleotidesBPHYT_RS20180 and BPHYT_RS20185 are separated by 251 nucleotides BPHYT_RS20170: BPHYT_RS20170 - sugar transporter, at 68,137 to 70,359 _RS20170 BPHYT_RS20175: BPHYT_RS20175 - protein-tyrosine-phosphatase, at 70,416 to 70,868 _RS20175 BPHYT_RS20180: BPHYT_RS20180 - sugar ABC transporter substrate-binding protein, at 70,865 to 71,917 _RS20180 BPHYT_RS20185: BPHYT_RS20185 - sugar transferase, at 72,169 to 73,530 _RS20185 Position (kb) 70 71 72Strain fitness (log2 ratio) -2 -1 0 1at 69.871 kb on - strand, within BPHYT_RS20170at 70.860 kb on - strandat 70.889 kb on + strandat 71.069 kb on + strand, within BPHYT_RS20180at 71.182 kb on + strand, within BPHYT_RS20180at 71.251 kb on + strand, within BPHYT_RS20180at 72.843 kb on + strand, within BPHYT_RS20185

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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69,871 - BPHYT_RS20170 0.78 -1.3
70,860 - -0.9
70,889 + +0.1
71,069 + BPHYT_RS20180 0.19 -2.7
71,182 + BPHYT_RS20180 0.30 -1.1
71,251 + BPHYT_RS20180 0.37 -1.3
72,843 + BPHYT_RS20185 0.49 +0.7

Or see this region's nucleotide sequence