Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11755

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11750 and BPHYT_RS11755 are separated by 1 nucleotidesBPHYT_RS11755 and BPHYT_RS11760 are separated by 37 nucleotides BPHYT_RS11750: BPHYT_RS11750 - spermidine/putrescine ABC transporter ATP-binding protein, at 2,664,959 to 2,666,140 _RS11750 BPHYT_RS11755: BPHYT_RS11755 - spermidine/putrescine ABC transporter substrate-binding protein, at 2,666,142 to 2,667,197 _RS11755 BPHYT_RS11760: BPHYT_RS11760 - polyamine ABC transporter substrate-binding protein, at 2,667,235 to 2,668,488 _RS11760 Position (kb) 2666 2667 2668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2665.220 kb on + strand, within BPHYT_RS11750at 2665.536 kb on - strand, within BPHYT_RS11750at 2666.183 kb on - strandat 2666.183 kb on - strandat 2666.283 kb on + strand, within BPHYT_RS11755at 2666.841 kb on + strand, within BPHYT_RS11755at 2667.944 kb on + strand, within BPHYT_RS11760at 2667.998 kb on - strand, within BPHYT_RS11760at 2668.127 kb on - strand, within BPHYT_RS11760at 2668.174 kb on + strand, within BPHYT_RS11760

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
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2,665,220 + BPHYT_RS11750 0.22 -0.4
2,665,536 - BPHYT_RS11750 0.49 +1.3
2,666,183 - +0.9
2,666,183 - -1.5
2,666,283 + BPHYT_RS11755 0.13 +0.3
2,666,841 + BPHYT_RS11755 0.66 +2.9
2,667,944 + BPHYT_RS11760 0.57 -2.1
2,667,998 - BPHYT_RS11760 0.61 +0.9
2,668,127 - BPHYT_RS11760 0.71 -0.3
2,668,174 + BPHYT_RS11760 0.75 +0.2

Or see this region's nucleotide sequence