Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08210

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS08200 and BPHYT_RS08210 are separated by 450 nucleotidesBPHYT_RS08210 and BPHYT_RS08215 are separated by 10 nucleotides BPHYT_RS08200: BPHYT_RS08200 - pilus assembly protein, at 1,874,984 to 1,875,838 _RS08200 BPHYT_RS08210: BPHYT_RS08210 - membrane protein, at 1,876,289 to 1,878,079 _RS08210 BPHYT_RS08215: BPHYT_RS08215 - Fis family transcriptional regulator, at 1,878,090 to 1,879,481 _RS08215 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -1 0 1 2 3 4at 1876.163 kb on - strandat 1876.613 kb on - strand, within BPHYT_RS08210at 1876.650 kb on - strand, within BPHYT_RS08210at 1876.713 kb on - strand, within BPHYT_RS08210at 1876.754 kb on - strand, within BPHYT_RS08210at 1876.814 kb on - strand, within BPHYT_RS08210at 1877.364 kb on - strand, within BPHYT_RS08210at 1877.431 kb on + strand, within BPHYT_RS08210at 1877.479 kb on + strand, within BPHYT_RS08210at 1877.479 kb on + strand, within BPHYT_RS08210at 1877.656 kb on - strand, within BPHYT_RS08210at 1877.998 kb on - strandat 1878.123 kb on - strandat 1878.126 kb on + strandat 1878.126 kb on + strandat 1878.213 kb on - strandat 1878.375 kb on + strand, within BPHYT_RS08215at 1878.822 kb on + strand, within BPHYT_RS08215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
remove
1,876,163 - -0.1
1,876,613 - BPHYT_RS08210 0.18 +0.6
1,876,650 - BPHYT_RS08210 0.20 +0.4
1,876,713 - BPHYT_RS08210 0.24 -0.0
1,876,754 - BPHYT_RS08210 0.26 -0.1
1,876,814 - BPHYT_RS08210 0.29 +0.9
1,877,364 - BPHYT_RS08210 0.60 -0.4
1,877,431 + BPHYT_RS08210 0.64 +2.5
1,877,479 + BPHYT_RS08210 0.66 +4.7
1,877,479 + BPHYT_RS08210 0.66 +1.7
1,877,656 - BPHYT_RS08210 0.76 +0.7
1,877,998 - +0.2
1,878,123 - +0.3
1,878,126 + +0.2
1,878,126 + -1.1
1,878,213 - +0.2
1,878,375 + BPHYT_RS08215 0.20 -0.4
1,878,822 + BPHYT_RS08215 0.53 -0.1

Or see this region's nucleotide sequence