Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03860 and BPHYT_RS03865 are separated by 390 nucleotides BPHYT_RS03865 and BPHYT_RS03870 are separated by 33 nucleotides
BPHYT_RS03860: BPHYT_RS03860 - MFS transporter, at 874,098 to 875,309
_RS03860
BPHYT_RS03865: BPHYT_RS03865 - FAD-binding molybdopterin dehydrogenase, at 875,700 to 877,223
_RS03865
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
Position (kb) 875
876
877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.751 kb on + strand, within BPHYT_RS03860 at 875.126 kb on - strand, within BPHYT_RS03860 at 875.126 kb on - strand, within BPHYT_RS03860 at 875.162 kb on + strand, within BPHYT_RS03860 at 875.163 kb on - strand, within BPHYT_RS03860 at 875.163 kb on - strand, within BPHYT_RS03860 at 875.185 kb on + strand, within BPHYT_RS03860 at 875.185 kb on + strand, within BPHYT_RS03860 at 875.420 kb on + strand at 875.422 kb on + strand at 875.422 kb on + strand at 875.423 kb on - strand at 875.477 kb on + strand at 875.590 kb on - strand at 875.612 kb on + strand at 875.622 kb on - strand at 875.692 kb on - strand at 875.721 kb on + strand at 875.781 kb on + strand at 875.781 kb on + strand at 875.949 kb on + strand, within BPHYT_RS03865 at 875.950 kb on - strand, within BPHYT_RS03865 at 876.098 kb on + strand, within BPHYT_RS03865 at 876.098 kb on + strand, within BPHYT_RS03865 at 876.099 kb on - strand, within BPHYT_RS03865 at 876.099 kb on - strand, within BPHYT_RS03865 at 876.099 kb on - strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.633 kb on - strand, within BPHYT_RS03865 at 877.095 kb on + strand at 877.221 kb on + strand at 877.591 kb on - strand, within BPHYT_RS03870 at 877.591 kb on - strand, within BPHYT_RS03870 at 877.834 kb on - strand, within BPHYT_RS03870 at 877.891 kb on - strand, within BPHYT_RS03870 at 878.133 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 874,751 + BPHYT_RS03860 0.54 +0.4 875,126 - BPHYT_RS03860 0.85 +0.1 875,126 - BPHYT_RS03860 0.85 -0.2 875,162 + BPHYT_RS03860 0.88 +0.1 875,163 - BPHYT_RS03860 0.88 -0.2 875,163 - BPHYT_RS03860 0.88 -0.7 875,185 + BPHYT_RS03860 0.90 -0.6 875,185 + BPHYT_RS03860 0.90 -2.1 875,420 + -2.7 875,422 + -0.9 875,422 + +0.5 875,423 - -1.8 875,477 + +0.7 875,590 - +0.9 875,612 + -0.2 875,622 - -3.3 875,692 - -2.2 875,721 + +1.3 875,781 + -0.5 875,781 + -2.2 875,949 + BPHYT_RS03865 0.16 +1.3 875,950 - BPHYT_RS03865 0.16 +2.4 876,098 + BPHYT_RS03865 0.26 +0.1 876,098 + BPHYT_RS03865 0.26 +0.3 876,099 - BPHYT_RS03865 0.26 +0.1 876,099 - BPHYT_RS03865 0.26 -0.9 876,099 - BPHYT_RS03865 0.26 -1.1 876,269 + BPHYT_RS03865 0.37 -0.5 876,269 + BPHYT_RS03865 0.37 -2.9 876,269 + BPHYT_RS03865 0.37 +1.1 876,633 - BPHYT_RS03865 0.61 +1.3 877,095 + -0.5 877,221 + +1.3 877,591 - BPHYT_RS03870 0.14 -0.0 877,591 - BPHYT_RS03870 0.14 -0.2 877,834 - BPHYT_RS03870 0.24 -0.4 877,891 - BPHYT_RS03870 0.27 -0.1 878,133 + BPHYT_RS03870 0.37 +0.1 878,139 + BPHYT_RS03870 0.37 -1.4 878,139 + BPHYT_RS03870 0.37 +0.4 878,140 - BPHYT_RS03870 0.37 -0.6 878,140 - BPHYT_RS03870 0.37 +0.4 878,140 - BPHYT_RS03870 0.37 +0.8 878,140 - BPHYT_RS03870 0.37 +0.9
Or see this region's nucleotide sequence