Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01980 and BPHYT_RS01985 are separated by 88 nucleotides BPHYT_RS01985 and BPHYT_RS01990 are separated by 422 nucleotides
BPHYT_RS01980: BPHYT_RS01980 - diguanylate cyclase, at 446,805 to 448,337
_RS01980
BPHYT_RS01985: BPHYT_RS01985 - hypothetical protein, at 448,426 to 449,049
_RS01985
BPHYT_RS01990: BPHYT_RS01990 - methyl-accepting chemotaxis protein, at 449,472 to 451,037
_RS01990
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 447.467 kb on + strand, within BPHYT_RS01980 at 447.467 kb on + strand, within BPHYT_RS01980 at 447.493 kb on - strand, within BPHYT_RS01980 at 447.564 kb on + strand, within BPHYT_RS01980 at 447.565 kb on - strand, within BPHYT_RS01980 at 447.565 kb on - strand, within BPHYT_RS01980 at 447.578 kb on + strand, within BPHYT_RS01980 at 447.579 kb on - strand, within BPHYT_RS01980 at 447.589 kb on - strand, within BPHYT_RS01980 at 447.589 kb on - strand at 447.630 kb on + strand, within BPHYT_RS01980 at 447.631 kb on - strand, within BPHYT_RS01980 at 447.631 kb on - strand, within BPHYT_RS01980 at 448.219 kb on + strand at 448.220 kb on - strand at 448.221 kb on + strand at 448.222 kb on - strand at 448.222 kb on - strand at 448.880 kb on - strand, within BPHYT_RS01985 at 448.918 kb on + strand, within BPHYT_RS01985 at 449.048 kb on - strand at 449.048 kb on - strand at 449.153 kb on + strand at 449.154 kb on - strand at 449.154 kb on - strand at 449.206 kb on - strand at 449.224 kb on + strand at 449.224 kb on + strand at 449.226 kb on + strand at 449.226 kb on + strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.227 kb on - strand at 449.309 kb on + strand at 449.349 kb on + strand at 449.349 kb on + strand at 449.350 kb on - strand at 449.465 kb on + strand at 449.570 kb on + strand at 449.594 kb on + strand at 449.594 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant remove 447,467 + BPHYT_RS01980 0.43 -0.3 447,467 + BPHYT_RS01980 0.43 -0.5 447,493 - BPHYT_RS01980 0.45 -2.6 447,564 + BPHYT_RS01980 0.50 +1.1 447,565 - BPHYT_RS01980 0.50 -0.3 447,565 - BPHYT_RS01980 0.50 -0.2 447,578 + BPHYT_RS01980 0.50 +0.5 447,579 - BPHYT_RS01980 0.50 -1.3 447,589 - BPHYT_RS01980 0.51 -0.3 447,589 - +1.4 447,630 + BPHYT_RS01980 0.54 -0.1 447,631 - BPHYT_RS01980 0.54 +0.2 447,631 - BPHYT_RS01980 0.54 +0.3 448,219 + +0.2 448,220 - -0.2 448,221 + -0.6 448,222 - +0.0 448,222 - +0.2 448,880 - BPHYT_RS01985 0.73 +2.6 448,918 + BPHYT_RS01985 0.79 -0.2 449,048 - -0.8 449,048 - -1.5 449,153 + +0.6 449,154 - -0.1 449,154 - -0.2 449,206 - +0.8 449,224 + -0.1 449,224 + +0.2 449,226 + -2.1 449,226 + +0.1 449,227 - -1.1 449,227 - -1.7 449,227 - +0.8 449,309 + +0.8 449,349 + -0.2 449,349 + -1.0 449,350 - +1.3 449,465 + +2.4 449,570 + +0.5 449,594 + +0.5 449,594 + +0.8
Or see this region's nucleotide sequence