Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23695 and BPHYT_RS23700 are separated by 70 nucleotides BPHYT_RS23700 and BPHYT_RS23705 are separated by 261 nucleotides
BPHYT_RS23695: BPHYT_RS23695 - peptidase S53, at 883,376 to 884,935
_RS23695
BPHYT_RS23700: BPHYT_RS23700 - peptidase S1, at 885,006 to 886,667
_RS23700
BPHYT_RS23705: BPHYT_RS23705 - hypothetical protein, at 886,929 to 887,582
_RS23705
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 884.441 kb on + strand, within BPHYT_RS23695 at 884.442 kb on - strand, within BPHYT_RS23695 at 884.442 kb on - strand, within BPHYT_RS23695 at 884.807 kb on + strand at 884.808 kb on - strand at 884.810 kb on - strand at 884.931 kb on + strand at 884.931 kb on + strand at 884.933 kb on + strand at 884.933 kb on + strand at 884.933 kb on + strand at 884.933 kb on + strand at 884.934 kb on - strand at 884.934 kb on - strand at 885.033 kb on - strand at 885.138 kb on + strand at 885.300 kb on + strand, within BPHYT_RS23700 at 885.300 kb on + strand, within BPHYT_RS23700 at 885.357 kb on + strand, within BPHYT_RS23700 at 885.658 kb on - strand, within BPHYT_RS23700 at 885.825 kb on + strand, within BPHYT_RS23700 at 886.026 kb on + strand, within BPHYT_RS23700 at 886.095 kb on + strand, within BPHYT_RS23700 at 886.118 kb on - strand, within BPHYT_RS23700 at 886.236 kb on + strand, within BPHYT_RS23700 at 886.236 kb on + strand, within BPHYT_RS23700 at 886.237 kb on - strand, within BPHYT_RS23700 at 886.357 kb on - strand, within BPHYT_RS23700 at 886.450 kb on - strand, within BPHYT_RS23700 at 886.538 kb on + strand at 886.546 kb on - strand at 886.546 kb on - strand at 886.596 kb on + strand at 886.666 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.841 kb on - strand at 886.854 kb on + strand at 886.854 kb on + strand at 886.855 kb on - strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.859 kb on - strand at 886.859 kb on - strand at 886.878 kb on + strand at 886.882 kb on + strand at 886.899 kb on + strand at 886.899 kb on + strand at 886.900 kb on - strand at 886.900 kb on - strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.989 kb on - strand at 886.989 kb on - strand at 886.989 kb on - strand at 886.993 kb on - strand at 887.096 kb on - strand, within BPHYT_RS23705 at 887.096 kb on - strand, within BPHYT_RS23705 at 887.096 kb on - strand, within BPHYT_RS23705 at 887.628 kb on - strand at 887.628 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 884,441 + BPHYT_RS23695 0.68 -3.1 884,442 - BPHYT_RS23695 0.68 +0.0 884,442 - BPHYT_RS23695 0.68 -0.3 884,807 + -1.2 884,808 - -0.2 884,810 - +1.2 884,931 + +0.5 884,931 + -0.4 884,933 + -0.3 884,933 + -0.6 884,933 + -1.1 884,933 + +1.0 884,934 - -1.6 884,934 - -1.0 885,033 - +1.9 885,138 + +0.8 885,300 + BPHYT_RS23700 0.18 +0.6 885,300 + BPHYT_RS23700 0.18 -2.9 885,357 + BPHYT_RS23700 0.21 -0.2 885,658 - BPHYT_RS23700 0.39 -0.9 885,825 + BPHYT_RS23700 0.49 -1.2 886,026 + BPHYT_RS23700 0.61 -1.4 886,095 + BPHYT_RS23700 0.66 +1.5 886,118 - BPHYT_RS23700 0.67 +0.2 886,236 + BPHYT_RS23700 0.74 -0.4 886,236 + BPHYT_RS23700 0.74 +0.4 886,237 - BPHYT_RS23700 0.74 -1.8 886,357 - BPHYT_RS23700 0.81 -0.6 886,450 - BPHYT_RS23700 0.87 +0.5 886,538 + -0.7 886,546 - -2.2 886,546 - -1.6 886,596 + -1.2 886,666 - -0.4 886,824 - -0.6 886,824 - -0.5 886,824 - -0.3 886,824 - +0.2 886,841 - -0.3 886,854 + +0.7 886,854 + -0.4 886,855 - +0.5 886,858 + +0.1 886,858 + +1.0 886,858 + +0.4 886,859 - -0.4 886,859 - -1.0 886,878 + -0.3 886,882 + +0.3 886,899 + -0.0 886,899 + -0.8 886,900 - -0.0 886,900 - -0.2 886,988 + +0.6 886,988 + -0.1 886,988 + -0.5 886,988 + -0.2 886,989 - +0.3 886,989 - -1.4 886,989 - -0.5 886,993 - -0.1 887,096 - BPHYT_RS23705 0.26 -0.4 887,096 - BPHYT_RS23705 0.26 +0.1 887,096 - BPHYT_RS23705 0.26 +0.1 887,628 - +0.3 887,628 - +0.3
Or see this region's nucleotide sequence