Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22390

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22385 and BPHYT_RS22390 are separated by 41 nucleotidesBPHYT_RS22390 and BPHYT_RS22395 are separated by 347 nucleotides BPHYT_RS22385: BPHYT_RS22385 - hypothetical protein, at 578,213 to 579,142 _RS22385 BPHYT_RS22390: BPHYT_RS22390 - glycine/betaine ABC transporter substrate-binding protein, at 579,184 to 580,149 _RS22390 BPHYT_RS22395: BPHYT_RS22395 - AraC family transcriptional regulator, at 580,497 to 581,450 _RS22395 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2 3at 578.221 kb on - strandat 578.718 kb on + strand, within BPHYT_RS22385at 578.719 kb on - strand, within BPHYT_RS22385at 578.719 kb on - strand, within BPHYT_RS22385at 578.719 kb on - strand, within BPHYT_RS22385at 578.724 kb on + strand, within BPHYT_RS22385at 578.725 kb on - strand, within BPHYT_RS22385at 578.949 kb on + strand, within BPHYT_RS22385at 578.950 kb on - strand, within BPHYT_RS22385at 579.430 kb on - strand, within BPHYT_RS22390at 579.430 kb on - strand, within BPHYT_RS22390at 579.485 kb on + strand, within BPHYT_RS22390at 579.485 kb on + strand, within BPHYT_RS22390at 579.689 kb on + strand, within BPHYT_RS22390at 579.762 kb on - strand, within BPHYT_RS22390at 579.802 kb on - strand, within BPHYT_RS22390at 580.282 kb on - strandat 580.391 kb on + strandat 580.391 kb on + strandat 580.508 kb on + strandat 580.508 kb on + strandat 580.743 kb on + strand, within BPHYT_RS22395at 580.743 kb on + strand, within BPHYT_RS22395at 580.958 kb on + strand, within BPHYT_RS22395

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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578,221 - +3.3
578,718 + BPHYT_RS22385 0.54 -1.5
578,719 - BPHYT_RS22385 0.54 -0.4
578,719 - BPHYT_RS22385 0.54 -0.9
578,719 - BPHYT_RS22385 0.54 -2.0
578,724 + BPHYT_RS22385 0.55 -0.4
578,725 - BPHYT_RS22385 0.55 +1.7
578,949 + BPHYT_RS22385 0.79 -0.1
578,950 - BPHYT_RS22385 0.79 -1.8
579,430 - BPHYT_RS22390 0.25 +1.1
579,430 - BPHYT_RS22390 0.25 +0.4
579,485 + BPHYT_RS22390 0.31 +0.0
579,485 + BPHYT_RS22390 0.31 +1.2
579,689 + BPHYT_RS22390 0.52 +1.3
579,762 - BPHYT_RS22390 0.60 +0.1
579,802 - BPHYT_RS22390 0.64 +0.8
580,282 - -1.4
580,391 + -1.2
580,391 + +0.1
580,508 + +0.6
580,508 + -1.0
580,743 + BPHYT_RS22395 0.26 -1.3
580,743 + BPHYT_RS22395 0.26 +1.7
580,958 + BPHYT_RS22395 0.48 -0.1

Or see this region's nucleotide sequence