Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21935

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21925 and BPHYT_RS21930 are separated by 171 nucleotidesBPHYT_RS21930 and BPHYT_RS21935 are separated by 81 nucleotidesBPHYT_RS21935 and BPHYT_RS21940 are separated by 165 nucleotides BPHYT_RS21925: BPHYT_RS21925 - formimidoylglutamase, at 476,132 to 477,094 _RS21925 BPHYT_RS21930: BPHYT_RS21930 - MarR family transcriptional regulator, at 477,266 to 477,688 _RS21930 BPHYT_RS21935: BPHYT_RS21935 - MarR family transcriptional regulator, at 477,770 to 478,192 _RS21935 BPHYT_RS21940: BPHYT_RS21940 - hemolysin D, at 478,358 to 479,383 _RS21940 Position (kb) 477 478 479Strain fitness (log2 ratio) -2 -1 0 1 2at 477.835 kb on - strand, within BPHYT_RS21935at 477.835 kb on - strand, within BPHYT_RS21935at 477.835 kb on - strand, within BPHYT_RS21935at 477.836 kb on + strand, within BPHYT_RS21935at 478.274 kb on - strandat 478.292 kb on - strandat 478.455 kb on - strandat 478.745 kb on + strand, within BPHYT_RS21940at 478.961 kb on + strand, within BPHYT_RS21940at 478.992 kb on - strand, within BPHYT_RS21940

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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477,835 - BPHYT_RS21935 0.15 +1.6
477,835 - BPHYT_RS21935 0.15 +2.6
477,835 - BPHYT_RS21935 0.15 -1.5
477,836 + BPHYT_RS21935 0.16 -2.3
478,274 - -0.8
478,292 - +0.0
478,455 - -0.2
478,745 + BPHYT_RS21940 0.38 -0.3
478,961 + BPHYT_RS21940 0.59 -1.0
478,992 - BPHYT_RS21940 0.62 -1.8

Or see this region's nucleotide sequence