Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20500 and BPHYT_RS20505 are separated by 497 nucleotides BPHYT_RS20505 and BPHYT_RS20510 are separated by 127 nucleotides BPHYT_RS20510 and BPHYT_RS20515 are separated by 65 nucleotides
BPHYT_RS20500: BPHYT_RS20500 - hypothetical protein, at 161,992 to 162,771
_RS20500
BPHYT_RS20505: BPHYT_RS20505 - carboxymethylenebutenolidase, at 163,269 to 163,976
_RS20505
BPHYT_RS20510: BPHYT_RS20510 - oxidoreductase, at 164,104 to 164,850
_RS20510
BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776
_RS20515
Position (kb) 163
164 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 162.426 kb on - strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.434 kb on + strand, within BPHYT_RS20500 at 162.442 kb on + strand, within BPHYT_RS20500 at 162.576 kb on + strand, within BPHYT_RS20500 at 162.600 kb on + strand, within BPHYT_RS20500 at 162.600 kb on + strand, within BPHYT_RS20500 at 162.600 kb on + strand, within BPHYT_RS20500 at 162.601 kb on - strand, within BPHYT_RS20500 at 162.608 kb on - strand, within BPHYT_RS20500 at 162.608 kb on - strand, within BPHYT_RS20500 at 162.765 kb on + strand at 162.765 kb on + strand at 162.765 kb on + strand at 162.765 kb on + strand at 162.766 kb on - strand at 162.766 kb on - strand at 162.766 kb on - strand at 162.766 kb on - strand at 162.810 kb on + strand at 162.813 kb on - strand at 162.813 kb on - strand at 162.813 kb on - strand at 162.816 kb on + strand at 163.086 kb on - strand at 163.251 kb on + strand at 163.706 kb on + strand, within BPHYT_RS20505 at 163.974 kb on + strand at 164.106 kb on - strand at 164.490 kb on - strand, within BPHYT_RS20510
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 162,426 - BPHYT_RS20500 0.56 +1.2 162,434 + BPHYT_RS20500 0.57 -1.3 162,434 + BPHYT_RS20500 0.57 +0.7 162,434 + BPHYT_RS20500 0.57 +0.3 162,434 + BPHYT_RS20500 0.57 +1.3 162,442 + BPHYT_RS20500 0.58 -0.9 162,576 + BPHYT_RS20500 0.75 +0.4 162,600 + BPHYT_RS20500 0.78 -0.6 162,600 + BPHYT_RS20500 0.78 +0.1 162,600 + BPHYT_RS20500 0.78 +0.5 162,601 - BPHYT_RS20500 0.78 -0.3 162,608 - BPHYT_RS20500 0.79 -2.9 162,608 - BPHYT_RS20500 0.79 +0.2 162,765 + +0.4 162,765 + -1.2 162,765 + -0.4 162,765 + +0.2 162,766 - +0.7 162,766 - -1.6 162,766 - -0.8 162,766 - +0.6 162,810 + +0.6 162,813 - +0.8 162,813 - -1.5 162,813 - +1.2 162,816 + -0.5 163,086 - -0.8 163,251 + -0.4 163,706 + BPHYT_RS20505 0.62 +1.0 163,974 + -0.4 164,106 - +0.2 164,490 - BPHYT_RS20510 0.52 +1.8
Or see this region's nucleotide sequence