Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07090

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07085 and BPHYT_RS07090 are separated by 127 nucleotidesBPHYT_RS07090 and BPHYT_RS07095 overlap by 31 nucleotides BPHYT_RS07085: BPHYT_RS07085 - LysR family transcriptional regulator, at 1,601,573 to 1,602,496 _RS07085 BPHYT_RS07090: BPHYT_RS07090 - hypothetical protein, at 1,602,624 to 1,602,941 _RS07090 BPHYT_RS07095: BPHYT_RS07095 - LysR family transcriptional regulator, at 1,602,911 to 1,603,837 _RS07095 Position (kb) 1602 1603Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1602.200 kb on + strand, within BPHYT_RS07085at 1602.377 kb on + strandat 1602.565 kb on + strandat 1602.565 kb on + strandat 1602.901 kb on + strand, within BPHYT_RS07090at 1602.913 kb on - strandat 1602.978 kb on + strandat 1603.530 kb on + strand, within BPHYT_RS07095at 1603.887 kb on + strandat 1603.888 kb on - strandat 1603.920 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,602,200 + BPHYT_RS07085 0.68 -0.7
1,602,377 + +0.3
1,602,565 + -4.0
1,602,565 + -0.5
1,602,901 + BPHYT_RS07090 0.87 +1.8
1,602,913 - +1.2
1,602,978 + -0.3
1,603,530 + BPHYT_RS07095 0.67 +0.2
1,603,887 + -1.7
1,603,888 - -0.0
1,603,920 + +0.4

Or see this region's nucleotide sequence