Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS06840

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS06830 and BPHYT_RS06835 are separated by 189 nucleotidesBPHYT_RS06835 and BPHYT_RS06840 are separated by 314 nucleotidesBPHYT_RS06840 and BPHYT_RS06845 overlap by 101 nucleotides BPHYT_RS06830: BPHYT_RS06830 - 23S ribosomal RNA, at 1,543,716 to 1,546,618 _RS06830 BPHYT_RS06835: BPHYT_RS06835 - 5S ribosomal RNA, at 1,546,808 to 1,546,921 _RS06835 BPHYT_RS06840: BPHYT_RS06840 - hypothetical protein, at 1,547,236 to 1,548,075 _RS06840 BPHYT_RS06845: BPHYT_RS06845 - hypothetical protein, at 1,547,975 to 1,549,756 _RS06845 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -2 -1 0 1 2at 1547.438 kb on + strand, within BPHYT_RS06840at 1547.439 kb on - strand, within BPHYT_RS06840at 1547.568 kb on - strand, within BPHYT_RS06840at 1547.568 kb on - strand, within BPHYT_RS06840at 1547.915 kb on + strand, within BPHYT_RS06840at 1548.219 kb on - strand, within BPHYT_RS06845at 1548.314 kb on + strand, within BPHYT_RS06845at 1548.314 kb on + strand, within BPHYT_RS06845at 1548.315 kb on - strand, within BPHYT_RS06845at 1548.719 kb on + strand, within BPHYT_RS06845at 1548.720 kb on - strand, within BPHYT_RS06845at 1548.720 kb on - strand, within BPHYT_RS06845at 1548.720 kb on - strand, within BPHYT_RS06845at 1548.891 kb on - strand, within BPHYT_RS06845at 1548.892 kb on + strand, within BPHYT_RS06845at 1548.892 kb on + strand, within BPHYT_RS06845at 1548.892 kb on + strand, within BPHYT_RS06845at 1548.892 kb on + strand, within BPHYT_RS06845at 1548.893 kb on - strand, within BPHYT_RS06845at 1548.893 kb on - strand, within BPHYT_RS06845

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,547,438 + BPHYT_RS06840 0.24 +1.2
1,547,439 - BPHYT_RS06840 0.24 +0.1
1,547,568 - BPHYT_RS06840 0.40 +1.7
1,547,568 - BPHYT_RS06840 0.40 +0.5
1,547,915 + BPHYT_RS06840 0.81 +0.4
1,548,219 - BPHYT_RS06845 0.14 -0.1
1,548,314 + BPHYT_RS06845 0.19 +1.8
1,548,314 + BPHYT_RS06845 0.19 -1.3
1,548,315 - BPHYT_RS06845 0.19 -1.4
1,548,719 + BPHYT_RS06845 0.42 +0.7
1,548,720 - BPHYT_RS06845 0.42 +0.1
1,548,720 - BPHYT_RS06845 0.42 +0.3
1,548,720 - BPHYT_RS06845 0.42 +0.8
1,548,891 - BPHYT_RS06845 0.51 -1.4
1,548,892 + BPHYT_RS06845 0.51 -2.0
1,548,892 + BPHYT_RS06845 0.51 -1.0
1,548,892 + BPHYT_RS06845 0.51 +0.0
1,548,892 + BPHYT_RS06845 0.51 -2.0
1,548,893 - BPHYT_RS06845 0.52 +1.0
1,548,893 - BPHYT_RS06845 0.52 -2.5

Or see this region's nucleotide sequence