Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03910 and BPHYT_RS03915 are separated by 157 nucleotides BPHYT_RS03915 and BPHYT_RS03920 are separated by 27 nucleotides BPHYT_RS03920 and BPHYT_RS03925 are separated by 306 nucleotides
BPHYT_RS03910: BPHYT_RS03910 - membrane protein, at 885,268 to 886,056
_RS03910
BPHYT_RS03915: BPHYT_RS03915 - hypothetical protein, at 886,214 to 886,465
_RS03915
BPHYT_RS03920: BPHYT_RS03920 - lysine transporter LysE, at 886,493 to 887,134
_RS03920
BPHYT_RS03925: BPHYT_RS03925 - LysR family transcriptional regulator, at 887,441 to 888,334
_RS03925
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.682 kb on + strand, within BPHYT_RS03910 at 885.683 kb on - strand, within BPHYT_RS03910 at 885.897 kb on - strand, within BPHYT_RS03910 at 886.029 kb on - strand at 886.220 kb on - strand at 886.220 kb on - strand at 886.275 kb on + strand, within BPHYT_RS03915 at 886.275 kb on + strand, within BPHYT_RS03915 at 886.276 kb on - strand, within BPHYT_RS03915 at 886.276 kb on - strand, within BPHYT_RS03915 at 886.276 kb on - strand, within BPHYT_RS03915 at 886.278 kb on + strand, within BPHYT_RS03915 at 886.278 kb on + strand, within BPHYT_RS03915 at 886.279 kb on - strand, within BPHYT_RS03915 at 886.279 kb on - strand, within BPHYT_RS03915 at 886.327 kb on + strand, within BPHYT_RS03915 at 886.328 kb on - strand, within BPHYT_RS03915 at 886.338 kb on + strand, within BPHYT_RS03915 at 886.774 kb on - strand, within BPHYT_RS03920 at 886.878 kb on + strand, within BPHYT_RS03920 at 886.879 kb on - strand, within BPHYT_RS03920 at 886.921 kb on - strand, within BPHYT_RS03920 at 887.139 kb on - strand at 887.498 kb on - strand at 887.498 kb on - strand at 887.702 kb on + strand, within BPHYT_RS03925 at 888.099 kb on - strand, within BPHYT_RS03925 at 888.107 kb on + strand, within BPHYT_RS03925 at 888.108 kb on - strand, within BPHYT_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 885,682 + BPHYT_RS03910 0.52 +1.8 885,682 + BPHYT_RS03910 0.52 -0.0 885,683 - BPHYT_RS03910 0.53 +0.0 885,897 - BPHYT_RS03910 0.80 -0.6 886,029 - -1.8 886,220 - +0.4 886,220 - -0.3 886,275 + BPHYT_RS03915 0.24 +0.7 886,275 + BPHYT_RS03915 0.24 +1.5 886,276 - BPHYT_RS03915 0.25 -0.5 886,276 - BPHYT_RS03915 0.25 +1.8 886,276 - BPHYT_RS03915 0.25 +1.2 886,278 + BPHYT_RS03915 0.25 -0.0 886,278 + BPHYT_RS03915 0.25 +0.5 886,279 - BPHYT_RS03915 0.26 -0.7 886,279 - BPHYT_RS03915 0.26 -2.3 886,327 + BPHYT_RS03915 0.45 -0.1 886,328 - BPHYT_RS03915 0.45 -1.8 886,338 + BPHYT_RS03915 0.49 -0.0 886,774 - BPHYT_RS03920 0.44 -2.6 886,878 + BPHYT_RS03920 0.60 +1.1 886,879 - BPHYT_RS03920 0.60 +0.7 886,921 - BPHYT_RS03920 0.67 +2.9 887,139 - +0.4 887,498 - +0.6 887,498 - -0.8 887,702 + BPHYT_RS03925 0.29 -1.4 888,099 - BPHYT_RS03925 0.74 +0.2 888,107 + BPHYT_RS03925 0.74 -0.8 888,108 - BPHYT_RS03925 0.75 +0.7
Or see this region's nucleotide sequence