Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02070

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02065 and BPHYT_RS02070 are separated by 562 nucleotidesBPHYT_RS02070 and BPHYT_RS02075 are separated by 700 nucleotides BPHYT_RS02065: BPHYT_RS02065 - membrane protein, at 472,648 to 473,676 _RS02065 BPHYT_RS02070: BPHYT_RS02070 - hypothetical protein, at 474,239 to 474,784 _RS02070 BPHYT_RS02075: BPHYT_RS02075 - porin, at 475,485 to 476,570 _RS02075 Position (kb) 474 475Strain fitness (log2 ratio) -2 -1 0 1 2at 473.284 kb on + strand, within BPHYT_RS02065at 473.285 kb on - strand, within BPHYT_RS02065at 473.344 kb on - strand, within BPHYT_RS02065at 473.379 kb on - strand, within BPHYT_RS02065at 473.416 kb on - strand, within BPHYT_RS02065at 473.837 kb on + strandat 473.838 kb on - strandat 473.838 kb on - strandat 473.838 kb on - strandat 473.843 kb on + strandat 473.844 kb on - strandat 473.844 kb on - strandat 473.844 kb on - strandat 473.946 kb on - strandat 474.039 kb on + strandat 474.040 kb on - strandat 474.107 kb on - strandat 474.107 kb on - strandat 474.442 kb on + strand, within BPHYT_RS02070at 474.699 kb on - strand, within BPHYT_RS02070at 475.291 kb on + strandat 475.316 kb on - strandat 475.316 kb on - strandat 475.330 kb on - strandat 475.360 kb on + strandat 475.593 kb on + strandat 475.593 kb on + strandat 475.594 kb on - strand, within BPHYT_RS02075at 475.773 kb on + strand, within BPHYT_RS02075at 475.773 kb on + strand, within BPHYT_RS02075

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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473,284 + BPHYT_RS02065 0.62 -0.5
473,285 - BPHYT_RS02065 0.62 -0.4
473,344 - BPHYT_RS02065 0.68 -1.1
473,379 - BPHYT_RS02065 0.71 -0.6
473,416 - BPHYT_RS02065 0.75 -0.4
473,837 + -0.1
473,838 - +0.1
473,838 - -2.3
473,838 - -2.0
473,843 + -0.0
473,844 - +2.1
473,844 - +0.8
473,844 - +0.2
473,946 - -0.1
474,039 + -0.5
474,040 - -0.0
474,107 - +0.5
474,107 - +1.1
474,442 + BPHYT_RS02070 0.37 +2.0
474,699 - BPHYT_RS02070 0.84 +1.1
475,291 + +0.2
475,316 - -1.0
475,316 - -2.6
475,330 - +0.3
475,360 + -0.1
475,593 + +0.3
475,593 + -0.0
475,594 - BPHYT_RS02075 0.10 -0.5
475,773 + BPHYT_RS02075 0.27 -2.1
475,773 + BPHYT_RS02075 0.27 -1.1

Or see this region's nucleotide sequence