Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00375 and BPHYT_RS00380 are separated by 134 nucleotides BPHYT_RS00380 and BPHYT_RS00385 overlap by 4 nucleotides BPHYT_RS00385 and BPHYT_RS00390 are separated by 229 nucleotides
BPHYT_RS00375: BPHYT_RS00375 - sugar ABC transporter, at 94,579 to 95,499
_RS00375
BPHYT_RS00380: BPHYT_RS00380 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 95,634 to 96,227
_RS00380
BPHYT_RS00385: BPHYT_RS00385 - decarboxylase, at 96,224 to 97,567
_RS00385
BPHYT_RS00390: BPHYT_RS00390 - AraC family transcriptional regulator, at 97,797 to 98,831
_RS00390
Position (kb) 96
97
98 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.397 kb on + strand, within BPHYT_RS00375 at 95.398 kb on - strand, within BPHYT_RS00375 at 95.405 kb on + strand, within BPHYT_RS00375 at 95.406 kb on - strand, within BPHYT_RS00375 at 95.504 kb on - strand at 95.704 kb on - strand, within BPHYT_RS00380 at 95.965 kb on - strand, within BPHYT_RS00380 at 95.965 kb on - strand, within BPHYT_RS00380 at 96.164 kb on - strand, within BPHYT_RS00380 at 96.382 kb on - strand, within BPHYT_RS00385 at 96.382 kb on - strand, within BPHYT_RS00385 at 96.419 kb on - strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.468 kb on + strand, within BPHYT_RS00385 at 96.469 kb on - strand, within BPHYT_RS00385 at 96.469 kb on - strand, within BPHYT_RS00385 at 96.510 kb on + strand, within BPHYT_RS00385 at 96.565 kb on - strand, within BPHYT_RS00385 at 96.589 kb on + strand, within BPHYT_RS00385 at 96.590 kb on - strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.623 kb on + strand, within BPHYT_RS00385 at 96.624 kb on - strand, within BPHYT_RS00385 at 96.654 kb on + strand, within BPHYT_RS00385 at 96.654 kb on + strand, within BPHYT_RS00385 at 96.655 kb on - strand, within BPHYT_RS00385 at 96.658 kb on + strand, within BPHYT_RS00385 at 96.789 kb on + strand, within BPHYT_RS00385 at 96.790 kb on - strand, within BPHYT_RS00385 at 96.790 kb on - strand, within BPHYT_RS00385 at 96.790 kb on - strand, within BPHYT_RS00385 at 96.832 kb on + strand, within BPHYT_RS00385 at 96.993 kb on - strand, within BPHYT_RS00385 at 97.218 kb on + strand, within BPHYT_RS00385 at 97.557 kb on + strand at 97.557 kb on + strand at 97.690 kb on + strand at 97.758 kb on + strand at 97.918 kb on + strand, within BPHYT_RS00390 at 97.918 kb on + strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.971 kb on - strand, within BPHYT_RS00390 at 98.176 kb on - strand, within BPHYT_RS00390 at 98.235 kb on + strand, within BPHYT_RS00390 at 98.409 kb on + strand, within BPHYT_RS00390 at 98.434 kb on + strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 95,397 + BPHYT_RS00375 0.89 +0.5 95,398 - BPHYT_RS00375 0.89 +2.2 95,405 + BPHYT_RS00375 0.90 -1.0 95,406 - BPHYT_RS00375 0.90 -1.0 95,504 - -0.6 95,704 - BPHYT_RS00380 0.12 +0.9 95,965 - BPHYT_RS00380 0.56 +0.3 95,965 - BPHYT_RS00380 0.56 -0.3 96,164 - BPHYT_RS00380 0.89 -1.3 96,382 - BPHYT_RS00385 0.12 -0.3 96,382 - BPHYT_RS00385 0.12 +0.2 96,419 - BPHYT_RS00385 0.15 -0.3 96,468 + BPHYT_RS00385 0.18 -0.3 96,468 + BPHYT_RS00385 0.18 +0.0 96,468 + BPHYT_RS00385 0.18 +0.5 96,469 - BPHYT_RS00385 0.18 -0.0 96,469 - BPHYT_RS00385 0.18 +1.0 96,510 + BPHYT_RS00385 0.21 -0.5 96,565 - BPHYT_RS00385 0.25 -1.1 96,589 + BPHYT_RS00385 0.27 -0.1 96,590 - BPHYT_RS00385 0.27 -0.1 96,623 + BPHYT_RS00385 0.30 -0.3 96,623 + BPHYT_RS00385 0.30 -1.0 96,623 + BPHYT_RS00385 0.30 +1.1 96,623 + BPHYT_RS00385 0.30 -1.1 96,624 - BPHYT_RS00385 0.30 +0.3 96,654 + BPHYT_RS00385 0.32 -0.5 96,654 + BPHYT_RS00385 0.32 -1.3 96,655 - BPHYT_RS00385 0.32 -0.0 96,658 + BPHYT_RS00385 0.32 -0.3 96,789 + BPHYT_RS00385 0.42 -0.1 96,790 - BPHYT_RS00385 0.42 +0.2 96,790 - BPHYT_RS00385 0.42 +1.0 96,790 - BPHYT_RS00385 0.42 +0.4 96,832 + BPHYT_RS00385 0.45 -0.7 96,993 - BPHYT_RS00385 0.57 -0.8 97,218 + BPHYT_RS00385 0.74 +0.1 97,557 + -0.1 97,557 + +0.5 97,690 + +0.1 97,758 + +0.3 97,918 + BPHYT_RS00390 0.12 -0.3 97,918 + BPHYT_RS00390 0.12 -0.7 97,919 - BPHYT_RS00390 0.12 -0.5 97,919 - BPHYT_RS00390 0.12 +0.0 97,919 - BPHYT_RS00390 0.12 -0.0 97,920 + BPHYT_RS00390 0.12 -2.7 97,920 + BPHYT_RS00390 0.12 -3.0 97,920 + BPHYT_RS00390 0.12 -1.0 97,971 - BPHYT_RS00390 0.17 +0.5 98,176 - BPHYT_RS00390 0.37 -0.4 98,235 + BPHYT_RS00390 0.42 -1.5 98,409 + BPHYT_RS00390 0.59 +0.6 98,434 + BPHYT_RS00390 0.62 -0.1 98,498 - BPHYT_RS00390 0.68 -1.6 98,498 - BPHYT_RS00390 0.68 -1.6
Or see this region's nucleotide sequence