Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20205 and BPHYT_RS20210 overlap by 1 nucleotides BPHYT_RS20210 and BPHYT_RS20215 are separated by 474 nucleotides
BPHYT_RS20205: BPHYT_RS20205 - alcohol dehydrogenase, at 78,863 to 80,023
_RS20205
BPHYT_RS20210: BPHYT_RS20210 - antibiotic biosynthesis monooxygenase, at 80,023 to 80,331
_RS20210
BPHYT_RS20215: BPHYT_RS20215 - RNA polymerase sigma 70, at 80,806 to 81,477
_RS20215
Position (kb) 78
79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 77.959 kb on + strand at 77.959 kb on + strand at 77.978 kb on - strand at 77.996 kb on - strand at 78.077 kb on - strand at 78.167 kb on - strand at 78.185 kb on - strand at 78.194 kb on - strand at 78.338 kb on - strand at 78.460 kb on + strand at 78.503 kb on - strand at 78.522 kb on + strand at 78.534 kb on - strand at 78.539 kb on - strand at 78.676 kb on + strand at 78.677 kb on - strand at 78.766 kb on - strand at 78.787 kb on + strand at 78.844 kb on + strand at 78.878 kb on - strand at 78.919 kb on + strand at 79.098 kb on - strand, within BPHYT_RS20205 at 79.098 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.411 kb on - strand, within BPHYT_RS20205 at 79.653 kb on + strand, within BPHYT_RS20205 at 79.654 kb on - strand, within BPHYT_RS20205 at 79.654 kb on - strand, within BPHYT_RS20205 at 80.046 kb on + strand at 80.167 kb on + strand, within BPHYT_RS20210 at 80.318 kb on + strand at 80.319 kb on - strand at 80.319 kb on - strand at 80.355 kb on + strand at 80.426 kb on + strand at 80.506 kb on + strand at 80.507 kb on - strand at 80.685 kb on - strand at 80.722 kb on + strand at 80.723 kb on - strand at 80.806 kb on - strand at 80.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 77,959 + -1.5 77,959 + -2.4 77,978 - +1.7 77,996 - +0.3 78,077 - +0.0 78,167 - +0.0 78,185 - -0.5 78,194 - +0.4 78,338 - -1.4 78,460 + +0.4 78,503 - -0.4 78,522 + -0.4 78,534 - -0.3 78,539 - +0.5 78,676 + -0.6 78,677 - +1.1 78,766 - -0.9 78,787 + -0.7 78,844 + +0.4 78,878 - -1.1 78,919 + -0.6 79,098 - BPHYT_RS20205 0.20 +0.1 79,098 - BPHYT_RS20205 0.20 -0.7 79,411 - BPHYT_RS20205 0.47 -0.1 79,411 - BPHYT_RS20205 0.47 -1.2 79,411 - BPHYT_RS20205 0.47 +2.1 79,411 - BPHYT_RS20205 0.47 +0.2 79,653 + BPHYT_RS20205 0.68 +3.5 79,654 - BPHYT_RS20205 0.68 +0.6 79,654 - BPHYT_RS20205 0.68 +1.2 80,046 + +0.2 80,167 + BPHYT_RS20210 0.47 -0.1 80,318 + -0.6 80,319 - +0.8 80,319 - +0.1 80,355 + +0.6 80,426 + +0.6 80,506 + -0.0 80,507 - +0.5 80,685 - -0.9 80,722 + -1.9 80,723 - +0.6 80,806 - -0.2 80,806 - -0.8
Or see this region's nucleotide sequence