Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03540 and BPHYT_RS03545 are separated by 102 nucleotides BPHYT_RS03545 and BPHYT_RS03550 are separated by 129 nucleotides
BPHYT_RS03540: BPHYT_RS03540 - peptidase C69, at 797,573 to 799,039
_RS03540
BPHYT_RS03545: BPHYT_RS03545 - apolipoprotein acyltransferase, at 799,142 to 799,993
_RS03545
BPHYT_RS03550: BPHYT_RS03550 - hypothetical protein, at 800,123 to 804,313
_RS03550
Position (kb) 799
800 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 798.369 kb on + strand, within BPHYT_RS03540 at 798.369 kb on + strand, within BPHYT_RS03540 at 798.369 kb on + strand, within BPHYT_RS03540 at 798.375 kb on + strand, within BPHYT_RS03540 at 798.516 kb on + strand, within BPHYT_RS03540 at 798.516 kb on + strand, within BPHYT_RS03540 at 798.517 kb on - strand, within BPHYT_RS03540 at 798.891 kb on + strand, within BPHYT_RS03540 at 798.900 kb on + strand at 798.901 kb on - strand at 798.922 kb on + strand at 799.046 kb on + strand at 799.047 kb on - strand at 799.047 kb on - strand at 799.047 kb on - strand at 799.094 kb on + strand at 799.094 kb on + strand at 799.094 kb on + strand at 799.094 kb on + strand at 799.095 kb on - strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.096 kb on + strand at 799.097 kb on - strand at 799.097 kb on - strand at 799.341 kb on + strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.342 kb on - strand, within BPHYT_RS03545 at 799.404 kb on + strand, within BPHYT_RS03545 at 799.404 kb on + strand, within BPHYT_RS03545 at 799.405 kb on - strand, within BPHYT_RS03545 at 799.608 kb on + strand, within BPHYT_RS03545 at 799.765 kb on - strand, within BPHYT_RS03545 at 799.818 kb on + strand, within BPHYT_RS03545 at 799.818 kb on + strand, within BPHYT_RS03545 at 799.818 kb on + strand, within BPHYT_RS03545 at 799.819 kb on - strand, within BPHYT_RS03545 at 799.819 kb on - strand, within BPHYT_RS03545 at 800.047 kb on + strand at 800.048 kb on - strand at 800.816 kb on - strand, within BPHYT_RS03550
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 798,369 + BPHYT_RS03540 0.54 -0.3 798,369 + BPHYT_RS03540 0.54 -1.0 798,369 + BPHYT_RS03540 0.54 +0.1 798,375 + BPHYT_RS03540 0.55 -0.0 798,516 + BPHYT_RS03540 0.64 -0.4 798,516 + BPHYT_RS03540 0.64 -3.4 798,517 - BPHYT_RS03540 0.64 -0.1 798,891 + BPHYT_RS03540 0.90 -0.5 798,900 + -0.2 798,901 - -0.6 798,922 + -0.0 799,046 + +0.5 799,047 - +0.2 799,047 - -0.4 799,047 - -1.1 799,094 + +1.3 799,094 + -0.7 799,094 + +2.5 799,094 + -0.0 799,095 - +2.1 799,096 + +0.5 799,096 + -1.0 799,096 + +0.7 799,097 - +0.1 799,097 - -0.4 799,341 + BPHYT_RS03545 0.23 -0.3 799,342 - BPHYT_RS03545 0.23 -0.5 799,342 - BPHYT_RS03545 0.23 -2.6 799,342 - BPHYT_RS03545 0.23 -0.3 799,342 - BPHYT_RS03545 0.23 -0.2 799,404 + BPHYT_RS03545 0.31 -3.0 799,404 + BPHYT_RS03545 0.31 -0.8 799,405 - BPHYT_RS03545 0.31 -1.0 799,608 + BPHYT_RS03545 0.55 +0.5 799,765 - BPHYT_RS03545 0.73 +1.5 799,818 + BPHYT_RS03545 0.79 +1.8 799,818 + BPHYT_RS03545 0.79 -0.9 799,818 + BPHYT_RS03545 0.79 -0.3 799,819 - BPHYT_RS03545 0.79 -0.4 799,819 - BPHYT_RS03545 0.79 -0.3 800,047 + -1.9 800,048 - -0.1 800,816 - BPHYT_RS03550 0.17 +1.1
Or see this region's nucleotide sequence