Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07790

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07785 and BPHYT_RS07790 are separated by 18 nucleotidesBPHYT_RS07790 and BPHYT_RS07795 are separated by 367 nucleotides BPHYT_RS07785: BPHYT_RS07785 - multidrug transporter, at 1,774,498 to 1,777,632 _RS07785 BPHYT_RS07790: BPHYT_RS07790 - RND transporter MFP subunit, at 1,777,651 to 1,779,060 _RS07790 BPHYT_RS07795: BPHYT_RS07795 - IclR family transcriptional regulator, at 1,779,428 to 1,780,264 _RS07795 Position (kb) 1777 1778 1779 1780Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1776.953 kb on + strand, within BPHYT_RS07785at 1777.481 kb on + strandat 1777.481 kb on + strandat 1777.925 kb on + strand, within BPHYT_RS07790at 1777.926 kb on - strand, within BPHYT_RS07790at 1778.139 kb on + strand, within BPHYT_RS07790at 1778.139 kb on + strand, within BPHYT_RS07790at 1778.140 kb on - strand, within BPHYT_RS07790at 1778.294 kb on + strand, within BPHYT_RS07790at 1778.294 kb on + strand, within BPHYT_RS07790at 1778.295 kb on - strand, within BPHYT_RS07790at 1778.295 kb on - strand, within BPHYT_RS07790at 1778.295 kb on - strand, within BPHYT_RS07790at 1778.358 kb on - strand, within BPHYT_RS07790at 1778.376 kb on - strand, within BPHYT_RS07790at 1778.636 kb on + strand, within BPHYT_RS07790at 1778.636 kb on + strand, within BPHYT_RS07790at 1778.637 kb on - strand, within BPHYT_RS07790at 1778.637 kb on - strand, within BPHYT_RS07790at 1778.637 kb on - strand, within BPHYT_RS07790at 1778.637 kb on - strand, within BPHYT_RS07790at 1778.769 kb on + strand, within BPHYT_RS07790at 1778.770 kb on - strand, within BPHYT_RS07790at 1778.770 kb on - strand, within BPHYT_RS07790at 1778.928 kb on + strandat 1778.929 kb on - strandat 1779.336 kb on + strandat 1779.368 kb on - strandat 1779.433 kb on + strandat 1779.668 kb on + strand, within BPHYT_RS07795at 1779.669 kb on - strand, within BPHYT_RS07795at 1779.774 kb on + strand, within BPHYT_RS07795at 1779.774 kb on + strand, within BPHYT_RS07795

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,776,953 + BPHYT_RS07785 0.78 +0.6
1,777,481 + -0.3
1,777,481 + +2.1
1,777,925 + BPHYT_RS07790 0.19 +1.1
1,777,926 - BPHYT_RS07790 0.20 +0.1
1,778,139 + BPHYT_RS07790 0.35 +0.3
1,778,139 + BPHYT_RS07790 0.35 +0.1
1,778,140 - BPHYT_RS07790 0.35 -0.2
1,778,294 + BPHYT_RS07790 0.46 -0.4
1,778,294 + BPHYT_RS07790 0.46 +1.3
1,778,295 - BPHYT_RS07790 0.46 -0.0
1,778,295 - BPHYT_RS07790 0.46 +0.3
1,778,295 - BPHYT_RS07790 0.46 -2.3
1,778,358 - BPHYT_RS07790 0.50 -0.2
1,778,376 - BPHYT_RS07790 0.51 -1.6
1,778,636 + BPHYT_RS07790 0.70 +0.5
1,778,636 + BPHYT_RS07790 0.70 +0.1
1,778,637 - BPHYT_RS07790 0.70 -0.8
1,778,637 - BPHYT_RS07790 0.70 +0.1
1,778,637 - BPHYT_RS07790 0.70 +0.7
1,778,637 - BPHYT_RS07790 0.70 -0.0
1,778,769 + BPHYT_RS07790 0.79 -0.1
1,778,770 - BPHYT_RS07790 0.79 -1.3
1,778,770 - BPHYT_RS07790 0.79 +0.8
1,778,928 + +1.0
1,778,929 - +0.0
1,779,336 + +0.9
1,779,368 - -0.5
1,779,433 + -0.2
1,779,668 + BPHYT_RS07795 0.29 -0.2
1,779,669 - BPHYT_RS07795 0.29 +0.7
1,779,774 + BPHYT_RS07795 0.41 +0.4
1,779,774 + BPHYT_RS07795 0.41 +3.2

Or see this region's nucleotide sequence