Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22060

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22055 and BPHYT_RS22060 are separated by 923 nucleotidesBPHYT_RS22060 and BPHYT_RS22065 are separated by 218 nucleotides BPHYT_RS22055: BPHYT_RS22055 - DNA-binding protein, at 503,655 to 504,227 _RS22055 BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692 _RS22060 BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383 _RS22065 Position (kb) 505 506 507Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 504.193 kb on - strandat 504.263 kb on + strandat 504.264 kb on - strandat 504.266 kb on - strandat 504.266 kb on - strandat 504.266 kb on - strandat 504.270 kb on - strandat 504.270 kb on - strandat 504.274 kb on - strandat 504.358 kb on - strandat 504.358 kb on - strandat 504.441 kb on - strandat 504.494 kb on - strandat 504.544 kb on - strandat 504.812 kb on + strandat 504.813 kb on - strandat 504.813 kb on - strandat 504.813 kb on - strandat 505.145 kb on + strandat 505.146 kb on - strandat 505.146 kb on - strandat 505.242 kb on - strandat 505.472 kb on + strand, within BPHYT_RS22060at 505.472 kb on + strand, within BPHYT_RS22060at 505.473 kb on - strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.478 kb on + strand, within BPHYT_RS22060at 505.478 kb on + strand, within BPHYT_RS22060at 505.479 kb on - strand, within BPHYT_RS22060at 505.479 kb on - strand, within BPHYT_RS22060at 505.553 kb on + strand, within BPHYT_RS22060at 505.554 kb on - strand, within BPHYT_RS22060at 505.554 kb on - strand, within BPHYT_RS22060at 505.595 kb on + strand, within BPHYT_RS22060at 505.595 kb on + strand, within BPHYT_RS22060at 505.595 kb on + strand, within BPHYT_RS22060at 505.599 kb on - strand, within BPHYT_RS22060at 505.599 kb on - strand, within BPHYT_RS22060at 505.880 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.007 kb on - strand, within BPHYT_RS22060at 506.165 kb on + strand, within BPHYT_RS22060at 506.165 kb on + strand, within BPHYT_RS22060at 506.213 kb on + strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.319 kb on - strand, within BPHYT_RS22060at 506.327 kb on + strand, within BPHYT_RS22060at 506.327 kb on + strand, within BPHYT_RS22060at 506.382 kb on - strand, within BPHYT_RS22060at 506.420 kb on + strand, within BPHYT_RS22060at 506.525 kb on - strand, within BPHYT_RS22060at 506.690 kb on + strandat 506.690 kb on + strandat 506.740 kb on - strandat 506.831 kb on - strandat 506.850 kb on + strandat 506.851 kb on - strandat 506.963 kb on - strandat 507.103 kb on + strand, within BPHYT_RS22065at 507.103 kb on + strand, within BPHYT_RS22065at 507.589 kb on + strand, within BPHYT_RS22065

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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504,193 - -0.8
504,263 + +2.0
504,264 - -0.2
504,266 - +0.8
504,266 - -0.0
504,266 - -1.2
504,270 - -0.0
504,270 - -2.7
504,274 - -0.2
504,358 - -1.6
504,358 - -2.7
504,441 - +0.5
504,494 - -0.5
504,544 - +0.0
504,812 + -0.6
504,813 - -3.3
504,813 - -3.0
504,813 - -0.7
505,145 + -2.0
505,146 - -2.0
505,146 - -2.0
505,242 - +0.4
505,472 + BPHYT_RS22060 0.21 -1.1
505,472 + BPHYT_RS22060 0.21 -2.1
505,473 - BPHYT_RS22060 0.21 -2.1
505,474 + BPHYT_RS22060 0.21 +0.3
505,474 + BPHYT_RS22060 0.21 -0.5
505,474 + BPHYT_RS22060 0.21 -1.4
505,474 + BPHYT_RS22060 0.21 -0.7
505,475 - BPHYT_RS22060 0.21 -1.3
505,475 - BPHYT_RS22060 0.21 -0.0
505,475 - BPHYT_RS22060 0.21 -1.6
505,475 - BPHYT_RS22060 0.21 -1.5
505,475 - BPHYT_RS22060 0.21 -1.4
505,475 - BPHYT_RS22060 0.21 -2.9
505,475 - BPHYT_RS22060 0.21 -0.5
505,475 - BPHYT_RS22060 0.21 -0.7
505,478 + BPHYT_RS22060 0.21 -3.7
505,478 + BPHYT_RS22060 0.21 -1.4
505,479 - BPHYT_RS22060 0.21 -1.1
505,479 - BPHYT_RS22060 0.21 -0.6
505,553 + BPHYT_RS22060 0.26 -0.5
505,554 - BPHYT_RS22060 0.26 -3.3
505,554 - BPHYT_RS22060 0.26 -1.3
505,595 + BPHYT_RS22060 0.29 -1.4
505,595 + BPHYT_RS22060 0.29 -1.4
505,595 + BPHYT_RS22060 0.29 -1.0
505,599 - BPHYT_RS22060 0.29 -0.6
505,599 - BPHYT_RS22060 0.29 -0.6
505,880 + BPHYT_RS22060 0.47 -0.4
506,006 + BPHYT_RS22060 0.55 -1.0
506,006 + BPHYT_RS22060 0.55 -2.2
506,006 + BPHYT_RS22060 0.55 -1.3
506,006 + BPHYT_RS22060 0.55 -0.6
506,006 + BPHYT_RS22060 0.55 -1.6
506,006 + BPHYT_RS22060 0.55 -1.6
506,006 + BPHYT_RS22060 0.55 -1.9
506,006 + BPHYT_RS22060 0.55 -0.4
506,006 + BPHYT_RS22060 0.55 -1.2
506,007 - BPHYT_RS22060 0.56 -0.3
506,165 + BPHYT_RS22060 0.66 -3.7
506,165 + BPHYT_RS22060 0.66 -2.9
506,213 + BPHYT_RS22060 0.69 -0.8
506,214 - BPHYT_RS22060 0.69 -1.1
506,214 - BPHYT_RS22060 0.69 -2.2
506,214 - BPHYT_RS22060 0.69 -0.9
506,319 - BPHYT_RS22060 0.76 -1.1
506,327 + BPHYT_RS22060 0.76 -2.4
506,327 + BPHYT_RS22060 0.76 -1.5
506,382 - BPHYT_RS22060 0.80 -2.7
506,420 + BPHYT_RS22060 0.82 -0.4
506,525 - BPHYT_RS22060 0.89 -1.1
506,690 + +0.5
506,690 + -0.2
506,740 - -0.5
506,831 - -0.1
506,850 + +0.5
506,851 - -3.0
506,963 - -0.5
507,103 + BPHYT_RS22065 0.13 -1.3
507,103 + BPHYT_RS22065 0.13 +0.8
507,589 + BPHYT_RS22065 0.46 +0.2

Or see this region's nucleotide sequence