Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07785

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07780 and BPHYT_RS07785 are separated by 3 nucleotidesBPHYT_RS07785 and BPHYT_RS07790 are separated by 18 nucleotides BPHYT_RS07780: BPHYT_RS07780 - nodulation protein, at 1,771,171 to 1,774,494 _RS07780 BPHYT_RS07785: BPHYT_RS07785 - multidrug transporter, at 1,774,498 to 1,777,632 _RS07785 BPHYT_RS07790: BPHYT_RS07790 - RND transporter MFP subunit, at 1,777,651 to 1,779,060 _RS07790 Position (kb) 1774 1775 1776 1777 1778Strain fitness (log2 ratio) -2 -1 0 1 2at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.771 kb on + strand, within BPHYT_RS07780at 1773.772 kb on - strand, within BPHYT_RS07780at 1773.774 kb on - strand, within BPHYT_RS07780at 1773.940 kb on + strand, within BPHYT_RS07780at 1774.031 kb on + strand, within BPHYT_RS07780at 1774.032 kb on - strand, within BPHYT_RS07780at 1774.109 kb on + strand, within BPHYT_RS07780at 1774.120 kb on - strand, within BPHYT_RS07780at 1774.598 kb on + strandat 1774.765 kb on + strandat 1774.766 kb on - strandat 1774.781 kb on + strandat 1775.000 kb on + strand, within BPHYT_RS07785at 1775.019 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.021 kb on + strand, within BPHYT_RS07785at 1775.022 kb on - strand, within BPHYT_RS07785at 1775.022 kb on - strand, within BPHYT_RS07785at 1775.318 kb on + strand, within BPHYT_RS07785at 1775.319 kb on - strand, within BPHYT_RS07785at 1775.343 kb on - strand, within BPHYT_RS07785at 1775.381 kb on + strand, within BPHYT_RS07785at 1775.446 kb on - strand, within BPHYT_RS07785at 1775.690 kb on + strand, within BPHYT_RS07785at 1775.915 kb on + strand, within BPHYT_RS07785at 1775.999 kb on + strand, within BPHYT_RS07785at 1775.999 kb on + strand, within BPHYT_RS07785at 1776.000 kb on - strand, within BPHYT_RS07785at 1776.166 kb on + strand, within BPHYT_RS07785at 1776.396 kb on - strand, within BPHYT_RS07785at 1776.500 kb on + strand, within BPHYT_RS07785at 1776.584 kb on + strand, within BPHYT_RS07785at 1776.584 kb on + strand, within BPHYT_RS07785at 1776.585 kb on - strand, within BPHYT_RS07785at 1776.953 kb on + strand, within BPHYT_RS07785at 1777.481 kb on + strandat 1777.481 kb on + strandat 1777.925 kb on + strand, within BPHYT_RS07790at 1777.926 kb on - strand, within BPHYT_RS07790at 1778.139 kb on + strand, within BPHYT_RS07790at 1778.139 kb on + strand, within BPHYT_RS07790at 1778.140 kb on - strand, within BPHYT_RS07790at 1778.294 kb on + strand, within BPHYT_RS07790at 1778.294 kb on + strand, within BPHYT_RS07790at 1778.295 kb on - strand, within BPHYT_RS07790at 1778.295 kb on - strand, within BPHYT_RS07790at 1778.295 kb on - strand, within BPHYT_RS07790at 1778.358 kb on - strand, within BPHYT_RS07790at 1778.376 kb on - strand, within BPHYT_RS07790

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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1,773,771 + BPHYT_RS07780 0.78 +0.8
1,773,771 + BPHYT_RS07780 0.78 +1.0
1,773,771 + BPHYT_RS07780 0.78 -0.9
1,773,771 + BPHYT_RS07780 0.78 -0.6
1,773,772 - BPHYT_RS07780 0.78 -1.9
1,773,774 - BPHYT_RS07780 0.78 -0.2
1,773,940 + BPHYT_RS07780 0.83 -0.6
1,774,031 + BPHYT_RS07780 0.86 -1.5
1,774,032 - BPHYT_RS07780 0.86 -1.8
1,774,109 + BPHYT_RS07780 0.88 +0.3
1,774,120 - BPHYT_RS07780 0.89 -0.1
1,774,598 + +0.5
1,774,765 + -0.8
1,774,766 - +0.8
1,774,781 + -0.3
1,775,000 + BPHYT_RS07785 0.16 +1.0
1,775,019 + BPHYT_RS07785 0.17 -0.4
1,775,021 + BPHYT_RS07785 0.17 +0.3
1,775,021 + BPHYT_RS07785 0.17 +0.2
1,775,021 + BPHYT_RS07785 0.17 +1.1
1,775,021 + BPHYT_RS07785 0.17 +0.3
1,775,021 + BPHYT_RS07785 0.17 +1.2
1,775,022 - BPHYT_RS07785 0.17 -0.2
1,775,022 - BPHYT_RS07785 0.17 -0.4
1,775,318 + BPHYT_RS07785 0.26 -1.6
1,775,319 - BPHYT_RS07785 0.26 +0.0
1,775,343 - BPHYT_RS07785 0.27 +0.8
1,775,381 + BPHYT_RS07785 0.28 +0.0
1,775,446 - BPHYT_RS07785 0.30 +0.4
1,775,690 + BPHYT_RS07785 0.38 +0.6
1,775,915 + BPHYT_RS07785 0.45 +2.5
1,775,999 + BPHYT_RS07785 0.48 -0.0
1,775,999 + BPHYT_RS07785 0.48 -0.1
1,776,000 - BPHYT_RS07785 0.48 -0.3
1,776,166 + BPHYT_RS07785 0.53 -0.6
1,776,396 - BPHYT_RS07785 0.61 -0.6
1,776,500 + BPHYT_RS07785 0.64 -0.3
1,776,584 + BPHYT_RS07785 0.67 -0.3
1,776,584 + BPHYT_RS07785 0.67 -2.0
1,776,585 - BPHYT_RS07785 0.67 +1.2
1,776,953 + BPHYT_RS07785 0.78 +0.0
1,777,481 + -0.2
1,777,481 + +0.4
1,777,925 + BPHYT_RS07790 0.19 +0.4
1,777,926 - BPHYT_RS07790 0.20 -0.1
1,778,139 + BPHYT_RS07790 0.35 -0.4
1,778,139 + BPHYT_RS07790 0.35 -2.1
1,778,140 - BPHYT_RS07790 0.35 -0.0
1,778,294 + BPHYT_RS07790 0.46 -1.9
1,778,294 + BPHYT_RS07790 0.46 +0.6
1,778,295 - BPHYT_RS07790 0.46 -0.8
1,778,295 - BPHYT_RS07790 0.46 +0.5
1,778,295 - BPHYT_RS07790 0.46 +0.2
1,778,358 - BPHYT_RS07790 0.50 +0.7
1,778,376 - BPHYT_RS07790 0.51 -0.6

Or see this region's nucleotide sequence