Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02140

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS02135 and BPHYT_RS02140 are separated by 347 nucleotidesBPHYT_RS02140 and BPHYT_RS02145 are separated by 136 nucleotides BPHYT_RS02135: BPHYT_RS02135 - glyoxylate reductase, at 489,128 to 490,069 _RS02135 BPHYT_RS02140: BPHYT_RS02140 - alpha/beta hydrolase, at 490,417 to 491,019 _RS02140 BPHYT_RS02145: BPHYT_RS02145 - sulfate ABC transporter substrate-binding protein, at 491,156 to 492,181 _RS02145 Position (kb) 490 491 492Strain fitness (log2 ratio) -1 0 1 2at 489.763 kb on - strand, within BPHYT_RS02135at 489.818 kb on - strand, within BPHYT_RS02135at 490.183 kb on + strandat 490.184 kb on - strandat 490.184 kb on - strandat 490.189 kb on + strandat 490.574 kb on + strand, within BPHYT_RS02140at 490.575 kb on - strand, within BPHYT_RS02140at 490.638 kb on + strand, within BPHYT_RS02140at 490.638 kb on + strand, within BPHYT_RS02140at 490.639 kb on - strand, within BPHYT_RS02140at 490.639 kb on - strand, within BPHYT_RS02140at 490.663 kb on + strand, within BPHYT_RS02140at 490.664 kb on - strand, within BPHYT_RS02140at 490.685 kb on - strand, within BPHYT_RS02140at 490.890 kb on + strand, within BPHYT_RS02140at 490.891 kb on - strand, within BPHYT_RS02140at 491.000 kb on + strandat 491.000 kb on + strandat 491.077 kb on + strandat 491.078 kb on - strandat 491.291 kb on + strand, within BPHYT_RS02145at 491.292 kb on - strand, within BPHYT_RS02145at 491.324 kb on + strand, within BPHYT_RS02145at 491.421 kb on + strand, within BPHYT_RS02145at 491.421 kb on + strand, within BPHYT_RS02145at 491.649 kb on - strand, within BPHYT_RS02145at 491.654 kb on + strand, within BPHYT_RS02145at 491.967 kb on - strand, within BPHYT_RS02145

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
remove
489,763 - BPHYT_RS02135 0.67 -0.4
489,818 - BPHYT_RS02135 0.73 +1.6
490,183 + -0.0
490,184 - -0.6
490,184 - -0.8
490,189 + -1.6
490,574 + BPHYT_RS02140 0.26 +0.3
490,575 - BPHYT_RS02140 0.26 +0.2
490,638 + BPHYT_RS02140 0.37 +1.9
490,638 + BPHYT_RS02140 0.37 -0.1
490,639 - BPHYT_RS02140 0.37 -0.1
490,639 - BPHYT_RS02140 0.37 -0.7
490,663 + BPHYT_RS02140 0.41 -0.7
490,664 - BPHYT_RS02140 0.41 -0.7
490,685 - BPHYT_RS02140 0.44 -0.4
490,890 + BPHYT_RS02140 0.78 +0.6
490,891 - BPHYT_RS02140 0.79 +0.7
491,000 + +2.6
491,000 + +0.7
491,077 + -0.6
491,078 - +0.0
491,291 + BPHYT_RS02145 0.13 -0.3
491,292 - BPHYT_RS02145 0.13 +1.1
491,324 + BPHYT_RS02145 0.16 -0.9
491,421 + BPHYT_RS02145 0.26 -1.3
491,421 + BPHYT_RS02145 0.26 +0.3
491,649 - BPHYT_RS02145 0.48 +0.3
491,654 + BPHYT_RS02145 0.49 -0.5
491,967 - BPHYT_RS02145 0.79 +0.5

Or see this region's nucleotide sequence