Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20385

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20380 and BPHYT_RS20385 are separated by 109 nucleotidesBPHYT_RS20385 and BPHYT_RS20390 are separated by 78 nucleotides BPHYT_RS20380: BPHYT_RS20380 - LysR family transcriptional regulator, at 135,141 to 136,067 _RS20380 BPHYT_RS20385: BPHYT_RS20385 - TetR family transcriptional regulator, at 136,177 to 136,761 _RS20385 BPHYT_RS20390: BPHYT_RS20390 - oxidoreductase, at 136,840 to 137,961 _RS20390 Position (kb) 136 137Strain fitness (log2 ratio) -1 0 1 2at 135.208 kb on + strandat 135.231 kb on - strandat 135.336 kb on + strand, within BPHYT_RS20380at 136.011 kb on - strandat 136.125 kb on - strandat 136.208 kb on - strandat 136.208 kb on - strandat 136.358 kb on + strand, within BPHYT_RS20385at 136.360 kb on + strand, within BPHYT_RS20385at 136.360 kb on + strand, within BPHYT_RS20385at 136.360 kb on + strand, within BPHYT_RS20385at 136.360 kb on + strand, within BPHYT_RS20385at 136.361 kb on - strand, within BPHYT_RS20385at 136.505 kb on + strand, within BPHYT_RS20385at 136.583 kb on + strand, within BPHYT_RS20385at 136.782 kb on + strandat 136.855 kb on - strandat 137.030 kb on + strand, within BPHYT_RS20390at 137.387 kb on + strand, within BPHYT_RS20390at 137.388 kb on - strand, within BPHYT_RS20390at 137.404 kb on - strand, within BPHYT_RS20390at 137.463 kb on - strand, within BPHYT_RS20390at 137.486 kb on - strand, within BPHYT_RS20390at 137.507 kb on + strand, within BPHYT_RS20390at 137.508 kb on - strand, within BPHYT_RS20390

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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135,208 + +0.8
135,231 - +0.5
135,336 + BPHYT_RS20380 0.21 +0.2
136,011 - -0.6
136,125 - -0.5
136,208 - +0.1
136,208 - +1.5
136,358 + BPHYT_RS20385 0.31 +0.4
136,360 + BPHYT_RS20385 0.31 +1.6
136,360 + BPHYT_RS20385 0.31 +0.2
136,360 + BPHYT_RS20385 0.31 +2.1
136,360 + BPHYT_RS20385 0.31 +0.3
136,361 - BPHYT_RS20385 0.31 -0.1
136,505 + BPHYT_RS20385 0.56 +0.2
136,583 + BPHYT_RS20385 0.69 +0.1
136,782 + +0.4
136,855 - -0.5
137,030 + BPHYT_RS20390 0.17 +0.1
137,387 + BPHYT_RS20390 0.49 +0.4
137,388 - BPHYT_RS20390 0.49 +0.3
137,404 - BPHYT_RS20390 0.50 +0.9
137,463 - BPHYT_RS20390 0.56 -0.3
137,486 - BPHYT_RS20390 0.58 -0.9
137,507 + BPHYT_RS20390 0.59 +0.3
137,508 - BPHYT_RS20390 0.60 -0.1

Or see this region's nucleotide sequence