Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20255 and BPHYT_RS20260 are separated by 291 nucleotides BPHYT_RS20260 and BPHYT_RS20265 are separated by 34 nucleotides
BPHYT_RS20255: BPHYT_RS20255 - peptide ABC transporter ATP-binding protein, at 88,236 to 90,002
_RS20255
BPHYT_RS20260: BPHYT_RS20260 - cytochrome C551 peroxidase, at 90,294 to 99,986
_RS20260
BPHYT_RS20265: BPHYT_RS20265 - amino acid adenylation protein, at 100,021 to 105,045
_RS20265
Position (kb) 90
91
92
93
94
95
96
97
98
99
100 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 90.102 kb on - strand at 90.387 kb on - strand at 90.529 kb on + strand at 90.530 kb on - strand at 90.768 kb on + strand at 90.769 kb on - strand at 91.401 kb on + strand, within BPHYT_RS20260 at 92.226 kb on + strand, within BPHYT_RS20260 at 92.226 kb on + strand, within BPHYT_RS20260 at 92.227 kb on - strand, within BPHYT_RS20260 at 92.270 kb on - strand, within BPHYT_RS20260 at 92.489 kb on + strand, within BPHYT_RS20260 at 92.683 kb on - strand, within BPHYT_RS20260 at 92.739 kb on + strand, within BPHYT_RS20260 at 92.912 kb on - strand, within BPHYT_RS20260 at 92.912 kb on - strand, within BPHYT_RS20260 at 93.300 kb on + strand, within BPHYT_RS20260 at 93.692 kb on + strand, within BPHYT_RS20260 at 93.693 kb on - strand, within BPHYT_RS20260 at 94.044 kb on + strand, within BPHYT_RS20260 at 94.174 kb on + strand, within BPHYT_RS20260 at 94.404 kb on + strand, within BPHYT_RS20260 at 94.427 kb on - strand, within BPHYT_RS20260 at 94.475 kb on + strand, within BPHYT_RS20260 at 94.476 kb on - strand, within BPHYT_RS20260 at 94.534 kb on - strand, within BPHYT_RS20260 at 94.593 kb on + strand, within BPHYT_RS20260 at 94.593 kb on + strand, within BPHYT_RS20260 at 94.594 kb on - strand, within BPHYT_RS20260 at 94.594 kb on - strand, within BPHYT_RS20260 at 94.963 kb on - strand, within BPHYT_RS20260 at 95.244 kb on - strand, within BPHYT_RS20260 at 95.517 kb on + strand, within BPHYT_RS20260 at 95.517 kb on + strand, within BPHYT_RS20260 at 95.575 kb on + strand, within BPHYT_RS20260 at 95.581 kb on + strand, within BPHYT_RS20260 at 95.746 kb on - strand, within BPHYT_RS20260 at 95.970 kb on + strand, within BPHYT_RS20260 at 96.352 kb on - strand, within BPHYT_RS20260 at 96.414 kb on + strand, within BPHYT_RS20260 at 96.415 kb on - strand, within BPHYT_RS20260 at 96.415 kb on - strand, within BPHYT_RS20260 at 96.783 kb on - strand, within BPHYT_RS20260 at 96.786 kb on + strand, within BPHYT_RS20260 at 96.786 kb on + strand, within BPHYT_RS20260 at 96.852 kb on + strand, within BPHYT_RS20260 at 97.236 kb on + strand, within BPHYT_RS20260 at 97.238 kb on + strand, within BPHYT_RS20260 at 98.239 kb on - strand, within BPHYT_RS20260 at 98.283 kb on - strand, within BPHYT_RS20260 at 98.428 kb on - strand, within BPHYT_RS20260 at 98.428 kb on - strand, within BPHYT_RS20260 at 98.540 kb on - strand, within BPHYT_RS20260 at 98.695 kb on - strand, within BPHYT_RS20260 at 99.034 kb on - strand at 99.204 kb on + strand at 99.205 kb on - strand at 99.368 kb on + strand at 99.487 kb on - strand at 99.561 kb on + strand at 99.561 kb on + strand at 99.576 kb on + strand at 99.577 kb on - strand at 99.984 kb on + strand at 100.017 kb on + strand at 100.017 kb on + strand at 100.017 kb on + strand at 100.539 kb on + strand, within BPHYT_RS20265
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 90,102 - -0.2 90,387 - +0.5 90,529 + -0.2 90,530 - +0.6 90,768 + +0.9 90,769 - +1.8 91,401 + BPHYT_RS20260 0.11 +1.6 92,226 + BPHYT_RS20260 0.20 +1.3 92,226 + BPHYT_RS20260 0.20 +0.8 92,227 - BPHYT_RS20260 0.20 +1.5 92,270 - BPHYT_RS20260 0.20 +1.7 92,489 + BPHYT_RS20260 0.23 +1.4 92,683 - BPHYT_RS20260 0.25 +3.3 92,739 + BPHYT_RS20260 0.25 +1.6 92,912 - BPHYT_RS20260 0.27 +1.3 92,912 - BPHYT_RS20260 0.27 +2.2 93,300 + BPHYT_RS20260 0.31 +1.9 93,692 + BPHYT_RS20260 0.35 +2.1 93,693 - BPHYT_RS20260 0.35 +1.7 94,044 + BPHYT_RS20260 0.39 +1.6 94,174 + BPHYT_RS20260 0.40 +2.0 94,404 + BPHYT_RS20260 0.42 +0.8 94,427 - BPHYT_RS20260 0.43 +1.6 94,475 + BPHYT_RS20260 0.43 +2.1 94,476 - BPHYT_RS20260 0.43 +5.5 94,534 - BPHYT_RS20260 0.44 +0.4 94,593 + BPHYT_RS20260 0.44 +2.0 94,593 + BPHYT_RS20260 0.44 -0.2 94,594 - BPHYT_RS20260 0.44 +2.3 94,594 - BPHYT_RS20260 0.44 +1.1 94,963 - BPHYT_RS20260 0.48 -0.2 95,244 - BPHYT_RS20260 0.51 +1.4 95,517 + BPHYT_RS20260 0.54 +0.9 95,517 + BPHYT_RS20260 0.54 +1.1 95,575 + BPHYT_RS20260 0.54 +2.2 95,581 + BPHYT_RS20260 0.55 +1.2 95,746 - BPHYT_RS20260 0.56 +2.3 95,970 + BPHYT_RS20260 0.59 +2.2 96,352 - BPHYT_RS20260 0.62 +0.5 96,414 + BPHYT_RS20260 0.63 +1.6 96,415 - BPHYT_RS20260 0.63 +2.1 96,415 - BPHYT_RS20260 0.63 +2.1 96,783 - BPHYT_RS20260 0.67 +1.9 96,786 + BPHYT_RS20260 0.67 +4.6 96,786 + BPHYT_RS20260 0.67 +2.2 96,852 + BPHYT_RS20260 0.68 +2.5 97,236 + BPHYT_RS20260 0.72 +2.2 97,238 + BPHYT_RS20260 0.72 -0.1 98,239 - BPHYT_RS20260 0.82 +0.8 98,283 - BPHYT_RS20260 0.82 +1.8 98,428 - BPHYT_RS20260 0.84 +1.8 98,428 - BPHYT_RS20260 0.84 +1.8 98,540 - BPHYT_RS20260 0.85 +2.2 98,695 - BPHYT_RS20260 0.87 +1.3 99,034 - +1.7 99,204 + +2.0 99,205 - +1.8 99,368 + +0.3 99,487 - +1.5 99,561 + +1.3 99,561 + +2.9 99,576 + +2.0 99,577 - +4.0 99,984 + +0.9 100,017 + +2.8 100,017 + +1.7 100,017 + +1.1 100,539 + BPHYT_RS20265 0.10 +1.8
Or see this region's nucleotide sequence