Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03090

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03085 and BPHYT_RS03090 are separated by 496 nucleotidesBPHYT_RS03090 and BPHYT_RS03095 are separated by 117 nucleotides BPHYT_RS03085: BPHYT_RS03085 - histidine kinase, at 687,338 to 691,645 _RS03085 BPHYT_RS03090: BPHYT_RS03090 - hypothetical protein, at 692,142 to 692,576 _RS03090 BPHYT_RS03095: BPHYT_RS03095 - alpha/beta hydrolase, at 692,694 to 693,650 _RS03095 Position (kb) 692 693Strain fitness (log2 ratio) -2 -1 0 1at 691.181 kb on + strand, within BPHYT_RS03085at 691.182 kb on - strand, within BPHYT_RS03085at 691.432 kb on + strandat 691.694 kb on - strandat 691.857 kb on - strandat 691.920 kb on + strandat 691.920 kb on + strandat 691.920 kb on + strandat 691.920 kb on + strandat 691.921 kb on - strandat 691.967 kb on + strandat 692.076 kb on + strandat 692.080 kb on - strandat 692.213 kb on + strand, within BPHYT_RS03090at 692.337 kb on + strand, within BPHYT_RS03090at 692.338 kb on - strand, within BPHYT_RS03090at 692.621 kb on - strandat 692.621 kb on - strandat 692.621 kb on - strandat 692.659 kb on - strandat 692.958 kb on + strand, within BPHYT_RS03095at 692.958 kb on + strand, within BPHYT_RS03095at 692.959 kb on - strand, within BPHYT_RS03095at 692.992 kb on + strand, within BPHYT_RS03095at 692.992 kb on + strand, within BPHYT_RS03095at 693.039 kb on + strand, within BPHYT_RS03095at 693.040 kb on - strand, within BPHYT_RS03095

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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691,181 + BPHYT_RS03085 0.89 +1.3
691,182 - BPHYT_RS03085 0.89 +0.2
691,432 + -0.4
691,694 - -2.0
691,857 - -0.8
691,920 + -0.0
691,920 + -0.7
691,920 + +0.9
691,920 + -1.1
691,921 - -0.3
691,967 + -0.8
692,076 + +0.2
692,080 - -2.7
692,213 + BPHYT_RS03090 0.16 +0.3
692,337 + BPHYT_RS03090 0.45 -1.3
692,338 - BPHYT_RS03090 0.45 -2.7
692,621 - -0.2
692,621 - +1.0
692,621 - +0.3
692,659 - +0.1
692,958 + BPHYT_RS03095 0.28 +0.6
692,958 + BPHYT_RS03095 0.28 +0.4
692,959 - BPHYT_RS03095 0.28 -1.5
692,992 + BPHYT_RS03095 0.31 +0.2
692,992 + BPHYT_RS03095 0.31 -2.0
693,039 + BPHYT_RS03095 0.36 +0.5
693,040 - BPHYT_RS03095 0.36 -0.3

Or see this region's nucleotide sequence