Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02485

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02480 and BPHYT_RS02485 are separated by 573 nucleotidesBPHYT_RS02485 and BPHYT_RS02490 are separated by 105 nucleotides BPHYT_RS02480: BPHYT_RS02480 - alkaline phosphatase, at 562,332 to 563,102 _RS02480 BPHYT_RS02485: BPHYT_RS02485 - membrane protein, at 563,676 to 564,464 _RS02485 BPHYT_RS02490: BPHYT_RS02490 - iron ABC transporter substrate-binding protein, at 564,570 to 565,685 _RS02490 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 563.144 kb on + strandat 563.197 kb on - strandat 563.204 kb on + strandat 563.205 kb on - strandat 563.286 kb on + strandat 563.546 kb on + strandat 563.638 kb on + strandat 563.639 kb on - strandat 563.652 kb on + strandat 563.667 kb on + strandat 563.691 kb on - strandat 564.285 kb on + strand, within BPHYT_RS02485at 564.286 kb on - strand, within BPHYT_RS02485at 564.570 kb on - strandat 564.586 kb on + strandat 564.596 kb on - strandat 564.596 kb on - strandat 564.734 kb on + strand, within BPHYT_RS02490at 564.734 kb on + strand, within BPHYT_RS02490at 564.735 kb on - strand, within BPHYT_RS02490at 564.738 kb on + strand, within BPHYT_RS02490at 564.932 kb on + strand, within BPHYT_RS02490at 564.933 kb on + strandat 565.006 kb on - strand, within BPHYT_RS02490at 565.149 kb on + strand, within BPHYT_RS02490at 565.459 kb on - strand, within BPHYT_RS02490

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
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563,144 + -0.7
563,197 - +1.4
563,204 + -0.2
563,205 - +0.8
563,286 + +0.3
563,546 + +0.0
563,638 + -1.0
563,639 - +0.3
563,652 + +1.4
563,667 + +0.7
563,691 - +0.2
564,285 + BPHYT_RS02485 0.77 -0.9
564,286 - BPHYT_RS02485 0.77 +0.4
564,570 - +0.1
564,586 + -0.6
564,596 - -0.9
564,596 - -2.1
564,734 + BPHYT_RS02490 0.15 -0.0
564,734 + BPHYT_RS02490 0.15 +0.4
564,735 - BPHYT_RS02490 0.15 +1.5
564,738 + BPHYT_RS02490 0.15 -0.7
564,932 + BPHYT_RS02490 0.32 -3.1
564,933 + -1.1
565,006 - BPHYT_RS02490 0.39 +2.0
565,149 + BPHYT_RS02490 0.52 +0.1
565,459 - BPHYT_RS02490 0.80 -0.6

Or see this region's nucleotide sequence