Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00385 and BPHYT_RS00390 are separated by 229 nucleotides BPHYT_RS00390 and BPHYT_RS00395 are separated by 259 nucleotides
BPHYT_RS00385: BPHYT_RS00385 - decarboxylase, at 96,224 to 97,567
_RS00385
BPHYT_RS00390: BPHYT_RS00390 - AraC family transcriptional regulator, at 97,797 to 98,831
_RS00390
BPHYT_RS00395: BPHYT_RS00395 - aldehyde dehydrogenase, at 99,091 to 100,518
_RS00395
Position (kb) 97
98
99 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 96.832 kb on + strand, within BPHYT_RS00385 at 96.993 kb on - strand, within BPHYT_RS00385 at 97.218 kb on + strand, within BPHYT_RS00385 at 97.557 kb on + strand at 97.557 kb on + strand at 97.690 kb on + strand at 97.758 kb on + strand at 97.918 kb on + strand, within BPHYT_RS00390 at 97.918 kb on + strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.919 kb on - strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.920 kb on + strand, within BPHYT_RS00390 at 97.971 kb on - strand, within BPHYT_RS00390 at 98.176 kb on - strand, within BPHYT_RS00390 at 98.235 kb on + strand, within BPHYT_RS00390 at 98.409 kb on + strand, within BPHYT_RS00390 at 98.434 kb on + strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.498 kb on - strand, within BPHYT_RS00390 at 98.659 kb on - strand, within BPHYT_RS00390 at 98.990 kb on + strand at 98.991 kb on - strand at 99.014 kb on - strand at 99.069 kb on + strand at 99.070 kb on - strand at 99.099 kb on + strand at 99.351 kb on - strand, within BPHYT_RS00395 at 99.351 kb on - strand, within BPHYT_RS00395 at 99.360 kb on + strand, within BPHYT_RS00395 at 99.393 kb on - strand at 99.447 kb on + strand, within BPHYT_RS00395 at 99.452 kb on - strand, within BPHYT_RS00395
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 96,832 + BPHYT_RS00385 0.45 -0.5 96,993 - BPHYT_RS00385 0.57 -0.8 97,218 + BPHYT_RS00385 0.74 -0.1 97,557 + -0.8 97,557 + +1.0 97,690 + -0.6 97,758 + -0.1 97,918 + BPHYT_RS00390 0.12 +0.2 97,918 + BPHYT_RS00390 0.12 -0.1 97,919 - BPHYT_RS00390 0.12 -0.6 97,919 - BPHYT_RS00390 0.12 +0.3 97,919 - BPHYT_RS00390 0.12 -1.2 97,920 + BPHYT_RS00390 0.12 +1.9 97,920 + BPHYT_RS00390 0.12 +0.4 97,920 + BPHYT_RS00390 0.12 +3.1 97,971 - BPHYT_RS00390 0.17 -1.5 98,176 - BPHYT_RS00390 0.37 -0.0 98,235 + BPHYT_RS00390 0.42 -1.5 98,409 + BPHYT_RS00390 0.59 +0.2 98,434 + BPHYT_RS00390 0.62 +0.4 98,498 - BPHYT_RS00390 0.68 +0.4 98,498 - BPHYT_RS00390 0.68 -1.6 98,659 - BPHYT_RS00390 0.83 -1.1 98,990 + -1.6 98,991 - -0.6 99,014 - +0.1 99,069 + +4.9 99,070 - +0.1 99,099 + +0.8 99,351 - BPHYT_RS00395 0.18 +0.8 99,351 - BPHYT_RS00395 0.18 +0.1 99,360 + BPHYT_RS00395 0.19 -0.8 99,393 - -0.9 99,447 + BPHYT_RS00395 0.25 +0.3 99,452 - BPHYT_RS00395 0.25 +1.2
Or see this region's nucleotide sequence