Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00095 and BPHYT_RS00100 are separated by 280 nucleotides BPHYT_RS00100 and BPHYT_RS00105 are separated by 43 nucleotides
BPHYT_RS00095: BPHYT_RS00095 - AraC family transcriptional regulator, at 28,838 to 29,704
_RS00095
BPHYT_RS00100: BPHYT_RS00100 - ethanolamine permease, at 29,985 to 31,388
_RS00100
BPHYT_RS00105: BPHYT_RS00105 - ethanolamine ammonia lyase large subunit, at 31,432 to 32,826
_RS00105
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 28.997 kb on - strand, within BPHYT_RS00095 at 28.998 kb on + strand, within BPHYT_RS00095 at 28.998 kb on + strand, within BPHYT_RS00095 at 28.999 kb on - strand, within BPHYT_RS00095 at 29.245 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.247 kb on + strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.248 kb on - strand, within BPHYT_RS00095 at 29.280 kb on - strand, within BPHYT_RS00095 at 29.376 kb on + strand, within BPHYT_RS00095 at 29.527 kb on + strand, within BPHYT_RS00095 at 29.559 kb on + strand, within BPHYT_RS00095 at 29.559 kb on + strand, within BPHYT_RS00095 at 29.560 kb on - strand, within BPHYT_RS00095 at 29.578 kb on - strand, within BPHYT_RS00095 at 29.640 kb on + strand at 29.640 kb on + strand at 29.641 kb on - strand at 29.690 kb on - strand at 29.744 kb on + strand at 29.784 kb on + strand at 29.835 kb on + strand at 30.118 kb on - strand at 30.180 kb on + strand, within BPHYT_RS00100 at 30.181 kb on - strand, within BPHYT_RS00100 at 30.181 kb on - strand, within BPHYT_RS00100 at 30.182 kb on + strand, within BPHYT_RS00100 at 30.221 kb on + strand, within BPHYT_RS00100 at 30.409 kb on - strand, within BPHYT_RS00100 at 30.826 kb on - strand, within BPHYT_RS00100 at 30.857 kb on + strand, within BPHYT_RS00100 at 30.857 kb on + strand, within BPHYT_RS00100 at 30.858 kb on - strand, within BPHYT_RS00100 at 31.047 kb on + strand, within BPHYT_RS00100 at 31.131 kb on + strand, within BPHYT_RS00100 at 31.132 kb on - strand, within BPHYT_RS00100 at 31.132 kb on - strand, within BPHYT_RS00100 at 31.133 kb on + strand, within BPHYT_RS00100 at 31.134 kb on - strand, within BPHYT_RS00100 at 31.439 kb on - strand at 31.768 kb on - strand, within BPHYT_RS00105 at 31.979 kb on - strand, within BPHYT_RS00105 at 32.236 kb on + strand, within BPHYT_RS00105 at 32.237 kb on - strand, within BPHYT_RS00105 at 32.287 kb on + strand, within BPHYT_RS00105 at 32.288 kb on - strand, within BPHYT_RS00105 at 32.288 kb on - strand, within BPHYT_RS00105 at 32.360 kb on + strand, within BPHYT_RS00105 at 32.361 kb on - strand, within BPHYT_RS00105 at 32.368 kb on + strand, within BPHYT_RS00105
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant remove 28,997 - BPHYT_RS00095 0.18 +1.0 28,998 + BPHYT_RS00095 0.18 +1.1 28,998 + BPHYT_RS00095 0.18 +1.9 28,999 - BPHYT_RS00095 0.19 -0.4 29,245 + BPHYT_RS00095 0.47 +1.4 29,247 + BPHYT_RS00095 0.47 +1.0 29,247 + BPHYT_RS00095 0.47 -0.7 29,247 + BPHYT_RS00095 0.47 -0.4 29,248 - BPHYT_RS00095 0.47 -0.1 29,248 - BPHYT_RS00095 0.47 +0.2 29,248 - BPHYT_RS00095 0.47 -0.2 29,248 - BPHYT_RS00095 0.47 -0.1 29,280 - BPHYT_RS00095 0.51 +0.1 29,376 + BPHYT_RS00095 0.62 -2.9 29,527 + BPHYT_RS00095 0.79 +2.0 29,559 + BPHYT_RS00095 0.83 -0.9 29,559 + BPHYT_RS00095 0.83 -1.4 29,560 - BPHYT_RS00095 0.83 -0.9 29,578 - BPHYT_RS00095 0.85 -0.0 29,640 + +0.1 29,640 + -0.0 29,641 - +0.3 29,690 - +2.2 29,744 + +1.2 29,784 + -0.5 29,835 + +0.9 30,118 - -1.4 30,180 + BPHYT_RS00100 0.14 +1.1 30,181 - BPHYT_RS00100 0.14 -1.0 30,181 - BPHYT_RS00100 0.14 -0.5 30,182 + BPHYT_RS00100 0.14 +0.4 30,221 + BPHYT_RS00100 0.17 -0.6 30,409 - BPHYT_RS00100 0.30 +2.9 30,826 - BPHYT_RS00100 0.60 -1.3 30,857 + BPHYT_RS00100 0.62 -0.0 30,857 + BPHYT_RS00100 0.62 -1.1 30,858 - BPHYT_RS00100 0.62 +0.4 31,047 + BPHYT_RS00100 0.76 -0.2 31,131 + BPHYT_RS00100 0.82 +1.3 31,132 - BPHYT_RS00100 0.82 +2.2 31,132 - BPHYT_RS00100 0.82 -1.1 31,133 + BPHYT_RS00100 0.82 +1.6 31,134 - BPHYT_RS00100 0.82 -0.2 31,439 - +0.8 31,768 - BPHYT_RS00105 0.24 +0.5 31,979 - BPHYT_RS00105 0.39 -0.1 32,236 + BPHYT_RS00105 0.58 +0.7 32,237 - BPHYT_RS00105 0.58 -0.7 32,287 + BPHYT_RS00105 0.61 +0.4 32,288 - BPHYT_RS00105 0.61 +0.1 32,288 - BPHYT_RS00105 0.61 -0.2 32,360 + BPHYT_RS00105 0.67 -0.2 32,361 - BPHYT_RS00105 0.67 +1.1 32,368 + BPHYT_RS00105 0.67 +0.2
Or see this region's nucleotide sequence