Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16250

Experiment: L-Malic 20 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic 20 mM (C)
3,689,885	+		PFLU_RS16240	0.80	-0.1
3,689,885	+		PFLU_RS16240	0.80	+2.0
3,689,886	-		PFLU_RS16240	0.80	+1.0
3,689,886	-		PFLU_RS16240	0.80	+1.0
3,689,886	-		PFLU_RS16240	0.80	+2.4
3,689,886	-		PFLU_RS16240	0.80	-1.1
3,689,889	+		PFLU_RS16240	0.80	-0.6
3,689,889	+		PFLU_RS16240	0.80	-0.5
3,689,889	+		PFLU_RS16240	0.80	+0.3
3,689,889	+		PFLU_RS16240	0.80	+0.8
3,689,889	+		PFLU_RS16240	0.80	+0.1
3,689,889	+		PFLU_RS16240	0.80	+1.1
3,689,889	+		PFLU_RS16240	0.80	-0.2
3,689,889	+		PFLU_RS16240	0.80	-1.8
3,689,889	+		PFLU_RS16240	0.80	-0.6
3,689,889	+		PFLU_RS16240	0.80	+1.0
3,689,889	+		PFLU_RS16240	0.80	+1.0
3,689,889	+		PFLU_RS16240	0.80	-0.2
3,689,889	+		PFLU_RS16240	0.80	-0.2
3,689,889	+		PFLU_RS16240	0.80	-1.6
3,689,889	+		PFLU_RS16240	0.80	+0.4
3,689,889	+		PFLU_RS16240	0.80	+0.2
3,689,890	-		PFLU_RS16240	0.81	-1.5
3,689,890	-		PFLU_RS16240	0.81	+0.4
3,689,890	-		PFLU_RS16240	0.81	+1.0
3,689,890	-		PFLU_RS16240	0.81	-1.2
3,689,890	-		PFLU_RS16240	0.81	+1.0
3,689,890	-		PFLU_RS16240	0.81	+0.6
3,689,890	-		PFLU_RS16240	0.81	-1.6
3,689,890	-		PFLU_RS16240	0.81	+0.2
3,689,890	-		PFLU_RS16240	0.81	-0.9
3,689,890	-		PFLU_RS16240	0.81	+0.1
3,689,890	-		PFLU_RS16240	0.81	-0.8
3,689,890	-		PFLU_RS16240	0.81	-1.5
3,689,890	-		PFLU_RS16240	0.81	-0.2
3,689,890	-		PFLU_RS16240	0.81	-0.0
3,689,944	+		PFLU_RS16240	0.87	+0.6
3,689,944	+		PFLU_RS16240	0.87	-0.1
3,689,944	+		PFLU_RS16240	0.87	+0.3
3,689,944	+		PFLU_RS16240	0.87	-1.8
3,689,944	+		PFLU_RS16240	0.87	-0.0
3,689,945	-		PFLU_RS16240	0.87	+0.1
3,689,945	-		PFLU_RS16240	0.87	+0.7
3,689,945	-		PFLU_RS16240	0.87	+0.6
3,689,945	-		PFLU_RS16240	0.87	+0.8
3,689,970	+				+1.4
3,689,970	+				+0.6
3,689,970	+				+0.2
3,689,970	+				+1.3
3,689,970	+				-2.3
3,689,970	+				-1.3
3,689,970	+				-0.8
3,689,970	+				-2.3
3,689,970	+				+0.5
3,689,971	-				+0.8
3,689,971	-				-0.2
3,689,971	-				+1.4
3,690,065	+				-0.0
3,690,065	+				-0.5
3,690,065	+				-0.6
3,690,065	+				-0.0
3,690,066	-				+0.9
3,690,066	-				+0.8
3,690,085	+				-0.0
3,690,085	+				-0.5
3,690,086	-				-0.5
3,690,335	-		PFLU_RS16245	0.33	+1.3
3,690,335	-		PFLU_RS16245	0.33	+0.1
3,690,335	-		PFLU_RS16245	0.33	+0.3
3,690,554	+		PFLU_RS16245	0.62	+0.1
3,690,554	+		PFLU_RS16245	0.62	+1.4
3,690,554	+		PFLU_RS16245	0.62	+1.1
3,690,554	+		PFLU_RS16245	0.62	-0.3
3,690,554	+		PFLU_RS16245	0.62	-0.2
3,690,555	-		PFLU_RS16245	0.62	-0.0
3,690,563	+		PFLU_RS16245	0.63	-0.1
3,690,563	+		PFLU_RS16245	0.63	-1.5
3,690,633	+		PFLU_RS16245	0.73	+1.0
3,690,634	-		PFLU_RS16245	0.73	-1.3
3,690,648	+		PFLU_RS16245	0.75	+1.3
3,690,665	+		PFLU_RS16245	0.77	+0.6
3,690,665	+		PFLU_RS16245	0.77	-0.3
3,690,665	+		PFLU_RS16245	0.77	-2.1
3,690,665	+		PFLU_RS16245	0.77	+0.6
3,690,666	-		PFLU_RS16245	0.77	+1.3
3,690,666	-		PFLU_RS16245	0.77	-0.6
3,690,666	-		PFLU_RS16245	0.77	-1.0
3,690,666	-		PFLU_RS16245	0.77	-1.2
3,690,666	-		PFLU_RS16245	0.77	+0.4
3,690,666	-		PFLU_RS16245	0.77	+0.4
3,690,666	-		PFLU_RS16245	0.77	+0.7
3,690,666	-		PFLU_RS16245	0.77	+0.4
3,690,666	-		PFLU_RS16245	0.77	-1.2
3,690,666	-		PFLU_RS16245	0.77	-0.2
3,690,803	-				+0.4
3,690,839	+				-1.0
3,690,839	+				+0.3
3,690,840	-				-1.0
3,690,847	-				-1.3
3,690,847	-				-1.0
3,690,847	-				-0.8
3,690,880	+				+0.3
3,690,880	+				+1.2
3,690,880	+				+1.6
3,690,881	-				-1.0
3,690,881	-				-0.6
3,690,881	-				-2.7
3,690,881	-				+1.0
3,690,896	+				+1.0
3,690,896	+				+0.5
3,690,896	+				+1.0
3,690,940	+		PFLU_RS16250	0.23	-0.0
3,690,940	+		PFLU_RS16250	0.23	-1.4
3,691,046	+		PFLU_RS16250	0.66	-0.3
3,691,087	+		PFLU_RS16250	0.83	-0.1
3,691,087	+		PFLU_RS16250	0.83	-0.3
3,691,087	+		PFLU_RS16250	0.83	+0.7
3,691,087	+		PFLU_RS16250	0.83	+0.6
3,691,088	-		PFLU_RS16250	0.83	+0.4
3,691,088	-		PFLU_RS16250	0.83	-2.0
3,691,141	+				-0.2
3,691,185	+				-0.1
3,691,206	+				-0.9
3,691,206	+				+0.1
3,691,206	+				+0.2
3,691,207	-				+0.8
3,691,207	-				-1.3
3,691,210	+				-1.0
3,691,210	+				-0.8
3,691,210	+				-2.2
3,691,211	-				+1.4
3,691,211	-				-0.0
3,691,211	-				-0.9
3,691,216	+				+0.1
3,691,216	+				+0.4
3,691,216	+				+1.8
3,691,216	+				+0.6
3,691,216	+				+0.4
3,691,216	+				+0.5
3,691,216	+				-0.5
3,691,217	-				-0.7
3,691,217	-				-0.0
3,691,217	-				-0.0
3,691,232	+				-0.1
3,691,242	+				-0.1
3,691,249	+				+0.3
3,691,250	-				+0.6
3,691,253	+				-0.7
3,691,253	+				+0.7
3,691,254	-				-2.3
3,691,254	-				+1.3
3,691,514	-		PFLU_RS16255	0.38	-0.0
3,691,537	+		PFLU_RS16255	0.42	-1.0
3,691,537	+		PFLU_RS16255	0.42	+1.6
3,691,537	+		PFLU_RS16255	0.42	-0.2
3,691,537	+		PFLU_RS16255	0.42	-0.4
3,691,537	+		PFLU_RS16255	0.42	+0.2
3,691,625	+		PFLU_RS16255	0.57	-0.0
3,691,625	+		PFLU_RS16255	0.57	-0.7
3,691,625	+		PFLU_RS16255	0.57	-1.3
3,691,625	+		PFLU_RS16255	0.57	-0.6
3,691,625	+		PFLU_RS16255	0.57	-0.3
3,691,625	+		PFLU_RS16255	0.57	-0.0
3,691,625	+		PFLU_RS16255	0.57	+2.0
3,691,625	+		PFLU_RS16255	0.57	+1.0
3,691,625	+		PFLU_RS16255	0.57	-0.2
3,691,625	+		PFLU_RS16255	0.57	-1.7
3,691,625	+		PFLU_RS16255	0.57	+0.3
3,691,625	+		PFLU_RS16255	0.57	+1.3
3,691,625	+		PFLU_RS16255	0.57	-1.0
3,691,625	+		PFLU_RS16255	0.57	-0.6
3,691,625	+		PFLU_RS16255	0.57	+1.0
3,691,625	+		PFLU_RS16255	0.57	+1.1
3,691,625	+		PFLU_RS16255	0.57	-1.2
3,691,625	+		PFLU_RS16255	0.57	+2.0
3,691,625	+		PFLU_RS16255	0.57	-0.0
3,691,625	+		PFLU_RS16255	0.57	-1.5
3,691,625	+		PFLU_RS16255	0.57	-0.0
3,691,625	+		PFLU_RS16255	0.57	+0.3
3,691,625	+		PFLU_RS16255	0.57	-0.2
3,691,625	+		PFLU_RS16255	0.57	+0.3
3,691,625	+		PFLU_RS16255	0.57	-0.8
3,691,625	+		PFLU_RS16255	0.57	+1.6
3,691,625	+		PFLU_RS16255	0.57	-2.2
3,691,625	+		PFLU_RS16255	0.57	-0.0
3,691,625	+		PFLU_RS16255	0.57	+2.0
3,691,625	+		PFLU_RS16255	0.57	+1.0
3,691,626	-		PFLU_RS16255	0.57	-0.0
3,691,626	-		PFLU_RS16255	0.57	-1.1
3,691,626	-		PFLU_RS16255	0.57	-0.0
3,691,626	-		PFLU_RS16255	0.57	-0.5
3,691,626	-		PFLU_RS16255	0.57	-0.3
3,691,626	-		PFLU_RS16255	0.57	+1.6
3,691,626	-		PFLU_RS16255	0.57	-1.3
3,691,626	-		PFLU_RS16255	0.57	+0.3
3,691,626	-		PFLU_RS16255	0.57	-0.5
3,691,626	-		PFLU_RS16255	0.57	-0.5
3,691,626	-		PFLU_RS16255	0.57	+0.6
3,691,626	-		PFLU_RS16255	0.57	+0.4
3,691,626	-		PFLU_RS16255	0.57	-0.0
3,691,626	-		PFLU_RS16255	0.57	+0.7
3,691,626	-		PFLU_RS16255	0.57	-2.2
3,691,626	-		PFLU_RS16255	0.57	-2.3
3,691,626	-		PFLU_RS16255	0.57	+0.6
3,691,626	-		PFLU_RS16255	0.57	+2.0
3,691,626	-		PFLU_RS16255	0.57	-0.8
3,691,626	-		PFLU_RS16255	0.57	+0.6
3,691,626	-		PFLU_RS16255	0.57	+0.4
3,691,626	-		PFLU_RS16255	0.57	+1.6
3,691,626	-		PFLU_RS16255	0.57	+3.0
3,691,626	-		PFLU_RS16255	0.57	-0.4
3,691,626	-		PFLU_RS16255	0.57	-0.2
3,691,626	-		PFLU_RS16255	0.57	-1.0
3,691,626	-		PFLU_RS16255	0.57	+0.5
3,691,626	-		PFLU_RS16255	0.57	+1.0
3,691,626	-		PFLU_RS16255	0.57	-0.0
3,691,626	-		PFLU_RS16255	0.57	+0.4
3,691,626	-		PFLU_RS16255	0.57	-1.3
3,691,626	-		PFLU_RS16255	0.57	-1.6
3,691,626	-		PFLU_RS16255	0.57	+0.2
3,691,626	-		PFLU_RS16255	0.57	+0.5
3,691,626	-		PFLU_RS16255	0.57	-0.4
3,691,662	+		PFLU_RS16255	0.63	-1.1
3,691,662	+		PFLU_RS16255	0.63	-0.6
3,691,663	-		PFLU_RS16255	0.63	+0.8
3,691,736	+		PFLU_RS16255	0.76	-0.0
3,691,736	+		PFLU_RS16255	0.76	+0.7
3,691,736	+		PFLU_RS16255	0.76	+0.6
3,691,737	-		PFLU_RS16255	0.76	-2.8
3,691,737	-		PFLU_RS16255	0.76	-1.0
3,691,737	-		PFLU_RS16255	0.76	-1.2
3,691,737	-		PFLU_RS16255	0.76	+0.7
3,691,737	-		PFLU_RS16255	0.76	+0.4
3,691,737	-		PFLU_RS16255	0.76	-0.8
3,691,737	-		PFLU_RS16255	0.76	-0.6
3,691,836	+				+0.5
3,691,837	-				-0.2
3,691,837	-				-0.3
3,691,837	-				+0.1
3,691,837	-				+0.1
3,692,033	+				-0.5
3,692,034	-				+0.3
3,692,034	-				-0.7
3,692,110	-				+0.6
3,692,110	-				-1.7